avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Scrt1 | mm10_v2_chr15_-_76521902_76522129 | -0.24 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_30924169 Show fit | 4.97 |
ENSMUST00000074671.6
|
hepcidin antimicrobial peptide 2 |
|
chr1_-_150466165 Show fit | 4.72 |
ENSMUST00000162367.1
ENSMUST00000161611.1 ENSMUST00000161320.1 ENSMUST00000159035.1 |
proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) |
|
chr1_-_150465563 Show fit | 4.52 |
ENSMUST00000164600.1
ENSMUST00000111902.2 ENSMUST00000111901.2 ENSMUST00000006171.9 |
proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) |
|
chr8_-_93131271 Show fit | 4.33 |
ENSMUST00000034189.8
|
carboxylesterase 1C |
|
chr19_-_40073731 Show fit | 4.15 |
ENSMUST00000048959.3
|
cytochrome P450, family 2, subfamily c, polypeptide 54 |
|
chr7_+_140763739 Show fit | 3.95 |
ENSMUST00000026552.7
|
cytochrome P450, family 2, subfamily e, polypeptide 1 |
|
chr10_-_107123585 Show fit | 3.69 |
ENSMUST00000165067.1
ENSMUST00000044668.4 |
acyl-CoA synthetase short-chain family member 3 |
|
chr2_+_122765377 Show fit | 2.96 |
ENSMUST00000124460.1
ENSMUST00000147475.1 |
sulfide quinone reductase-like (yeast) |
|
chr4_-_57916283 Show fit | 2.91 |
ENSMUST00000063816.5
|
RIKEN cDNA D630039A03 gene |
|
chr12_-_4592927 Show fit | 2.62 |
ENSMUST00000170816.1
|
predicted gene 3625 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 8.0 | GO:0045409 | negative regulation of interleukin-6 biosynthetic process(GO:0045409) |
2.0 | 5.9 | GO:1904274 | tricellular tight junction assembly(GO:1904274) |
1.2 | 5.0 | GO:0034760 | negative regulation of iron ion transport(GO:0034757) negative regulation of iron ion transmembrane transport(GO:0034760) |
0.1 | 4.3 | GO:0006687 | glycosphingolipid metabolic process(GO:0006687) |
0.1 | 4.0 | GO:0017144 | drug metabolic process(GO:0017144) |
0.6 | 3.9 | GO:0001757 | somite specification(GO:0001757) |
0.2 | 3.6 | GO:0060363 | cranial suture morphogenesis(GO:0060363) |
0.4 | 3.4 | GO:0060332 | positive regulation of response to interferon-gamma(GO:0060332) positive regulation of interferon-gamma-mediated signaling pathway(GO:0060335) |
0.2 | 3.1 | GO:0090110 | cargo loading into COPII-coated vesicle(GO:0090110) |
0.4 | 3.0 | GO:1990504 | dense core granule exocytosis(GO:1990504) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 30.6 | GO:0005615 | extracellular space(GO:0005615) |
0.8 | 6.2 | GO:0061689 | tricellular tight junction(GO:0061689) |
0.0 | 5.8 | GO:0005667 | transcription factor complex(GO:0005667) |
0.0 | 5.0 | GO:0043235 | receptor complex(GO:0043235) |
0.5 | 3.9 | GO:1990357 | terminal web(GO:1990357) |
0.4 | 3.6 | GO:0032937 | SREBP-SCAP-Insig complex(GO:0032937) |
0.0 | 2.9 | GO:0031227 | intrinsic component of endoplasmic reticulum membrane(GO:0031227) |
0.0 | 2.6 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 2.5 | GO:0070160 | bicellular tight junction(GO:0005923) occluding junction(GO:0070160) |
0.1 | 2.2 | GO:0032426 | stereocilium tip(GO:0032426) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 10.5 | GO:0001871 | pattern binding(GO:0001871) polysaccharide binding(GO:0030247) |
0.3 | 6.7 | GO:0030169 | low-density lipoprotein particle binding(GO:0030169) |
0.0 | 6.0 | GO:0001046 | core promoter sequence-specific DNA binding(GO:0001046) |
0.0 | 4.9 | GO:0005179 | hormone activity(GO:0005179) |
0.0 | 4.3 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
1.0 | 4.2 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
0.0 | 4.1 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.1 | 4.0 | GO:0016712 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) |
0.1 | 3.9 | GO:0003785 | actin monomer binding(GO:0003785) |
1.2 | 3.7 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 9.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 4.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 3.0 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 2.2 | PID TXA2PATHWAY | Thromboxane A2 receptor signaling |
0.0 | 1.6 | PID IFNG PATHWAY | IFN-gamma pathway |
0.1 | 1.5 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 1.4 | PID UPA UPAR PATHWAY | Urokinase-type plasminogen activator (uPA) and uPAR-mediated signaling |
0.0 | 1.4 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.0 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.0 | 1.0 | ST INTEGRIN SIGNALING PATHWAY | Integrin Signaling Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.2 | REACTOME SULFUR AMINO ACID METABOLISM | Genes involved in Sulfur amino acid metabolism |
1.3 | 4.0 | REACTOME XENOBIOTICS | Genes involved in Xenobiotics |
0.0 | 2.6 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.0 | 2.3 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.1 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.1 | 2.0 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
0.1 | 2.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 1.9 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 1.7 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.1 | 1.6 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |