avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Sin3a | mm10_v2_chr9_+_57076343_57076387 | -0.49 | 2.5e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_-_3583146 Show fit | 2.66 |
ENSMUST00000110698.2
|
growth hormone receptor |
|
chr15_-_3583191 Show fit | 2.35 |
ENSMUST00000069451.4
|
growth hormone receptor |
|
chr19_+_46131888 Show fit | 2.14 |
ENSMUST00000043739.3
|
elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 |
|
chr2_+_58567360 Show fit | 2.05 |
ENSMUST00000071543.5
|
uridine phosphorylase 2 |
|
chr1_+_39193731 Show fit | 2.04 |
ENSMUST00000173050.1
|
neuronal PAS domain protein 2 |
|
chr16_-_18089022 Show fit | 1.67 |
ENSMUST00000132241.1
ENSMUST00000139861.1 ENSMUST00000003620.5 |
proline dehydrogenase |
|
chr17_+_85621017 Show fit | 1.62 |
ENSMUST00000162695.2
|
sine oculis-related homeobox 3 |
|
chr7_+_44590886 Show fit | 1.58 |
ENSMUST00000107906.3
|
potassium voltage gated channel, Shaw-related subfamily, member 3 |
|
chrX_+_103356464 Show fit | 1.37 |
ENSMUST00000116547.2
|
cysteine-rich hydrophobic domain 1 |
|
chr16_+_44173271 Show fit | 1.33 |
ENSMUST00000088356.4
ENSMUST00000169582.1 |
predicted gene 608 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.4 | GO:0046449 | creatinine metabolic process(GO:0046449) |
0.2 | 3.1 | GO:0006751 | glutathione catabolic process(GO:0006751) |
0.4 | 2.7 | GO:0051775 | response to redox state(GO:0051775) |
0.1 | 2.5 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
0.8 | 2.3 | GO:0097402 | neuroblast migration(GO:0097402) |
0.1 | 2.3 | GO:1901185 | negative regulation of epidermal growth factor receptor signaling pathway(GO:0042059) negative regulation of ERBB signaling pathway(GO:1901185) |
0.1 | 2.2 | GO:1901522 | positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522) |
0.2 | 1.8 | GO:0033564 | anterior/posterior axon guidance(GO:0033564) |
0.0 | 1.8 | GO:0070936 | protein K48-linked ubiquitination(GO:0070936) |
0.6 | 1.7 | GO:0010133 | proline catabolic process to glutamate(GO:0010133) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 5.7 | GO:0070195 | growth hormone receptor complex(GO:0070195) |
0.0 | 3.6 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 3.5 | GO:0000151 | ubiquitin ligase complex(GO:0000151) |
0.1 | 3.1 | GO:0032809 | neuronal cell body membrane(GO:0032809) |
0.0 | 3.0 | GO:0005938 | cell cortex(GO:0005938) |
0.1 | 2.3 | GO:0005763 | organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763) |
0.3 | 2.1 | GO:0045098 | type III intermediate filament(GO:0045098) |
0.0 | 2.0 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.1 | 1.5 | GO:1902711 | GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711) |
0.1 | 1.5 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 5.7 | GO:0004903 | growth hormone receptor activity(GO:0004903) |
0.4 | 3.7 | GO:0004886 | 9-cis retinoic acid receptor activity(GO:0004886) |
0.0 | 3.3 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
0.3 | 3.1 | GO:0036374 | glutathione hydrolase activity(GO:0036374) |
0.1 | 2.9 | GO:0001222 | transcription corepressor binding(GO:0001222) |
0.0 | 2.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.4 | 2.1 | GO:0004850 | uridine phosphorylase activity(GO:0004850) |
0.0 | 2.1 | GO:0051879 | Hsp90 protein binding(GO:0051879) |
0.1 | 1.8 | GO:0045295 | gamma-catenin binding(GO:0045295) |
0.1 | 1.8 | GO:0043295 | glutathione binding(GO:0043295) oligopeptide binding(GO:1900750) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.5 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.1 | 4.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 3.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.1 | 2.5 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
0.1 | 2.4 | PID TRAIL PATHWAY | TRAIL signaling pathway |
0.1 | 2.0 | SA PTEN PATHWAY | PTEN is a tumor suppressor that dephosphorylates the lipid messenger phosphatidylinositol triphosphate. |
0.0 | 1.8 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.8 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 1.7 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 1.6 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.9 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.3 | 6.6 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |
0.1 | 5.5 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.2 | REACTOME PYRIMIDINE CATABOLISM | Genes involved in Pyrimidine catabolism |
0.1 | 2.1 | REACTOME NEGATIVE REGULATION OF THE PI3K AKT NETWORK | Genes involved in Negative regulation of the PI3K/AKT network |
0.2 | 2.0 | REACTOME ROLE OF SECOND MESSENGERS IN NETRIN1 SIGNALING | Genes involved in Role of second messengers in netrin-1 signaling |
0.2 | 2.0 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.1 | 1.9 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 1.8 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 1.6 | REACTOME GABA A RECEPTOR ACTIVATION | Genes involved in GABA A receptor activation |