avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Snai1 | mm10_v2_chr2_+_167538192_167538210 | 0.48 | 2.9e-03 | Click! |
Snai2 | mm10_v2_chr16_+_14705832_14705858 | -0.37 | 2.8e-02 | Click! |
Zeb1 | mm10_v2_chr18_+_5591860_5591902 | -0.11 | 5.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_137430517 Show fit | 18.82 |
ENSMUST00000102522.4
|
chymotrypsin-like elastase family, member 3B |
|
chr4_-_137409777 Show fit | 12.50 |
ENSMUST00000024200.6
|
predicted gene 13011 |
|
chr2_-_28563362 Show fit | 11.34 |
ENSMUST00000028161.5
|
carboxyl ester lipase |
|
chr19_+_52264323 Show fit | 10.26 |
ENSMUST00000039652.4
|
insulin I |
|
chr6_+_114131229 Show fit | 9.35 |
ENSMUST00000032451.7
|
solute carrier family 6 (neurotransmitter transporter, GABA), member 11 |
|
chr8_-_105933832 Show fit | 8.63 |
ENSMUST00000034368.6
|
chymotrypsin-like |
|
chr6_+_41458923 Show fit | 8.47 |
ENSMUST00000031910.7
|
protease, serine, 1 (trypsin 1) |
|
chr7_-_142578093 Show fit | 7.64 |
ENSMUST00000149974.1
ENSMUST00000152754.1 |
H19 fetal liver mRNA |
|
chr8_-_122460666 Show fit | 7.61 |
ENSMUST00000006762.5
|
snail homolog 3 (Drosophila) |
|
chr7_-_142578139 Show fit | 7.26 |
ENSMUST00000136359.1
|
H19 fetal liver mRNA |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 43.5 | GO:0007586 | digestion(GO:0007586) |
0.0 | 16.8 | GO:0006508 | proteolysis(GO:0006508) |
1.3 | 16.4 | GO:2000653 | regulation of genetic imprinting(GO:2000653) |
2.0 | 16.3 | GO:1901748 | leukotriene D4 metabolic process(GO:1901748) leukotriene D4 biosynthetic process(GO:1901750) |
0.7 | 10.2 | GO:0016127 | cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127) |
0.3 | 10.1 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
1.4 | 10.0 | GO:0061502 | early endosome to recycling endosome transport(GO:0061502) |
0.5 | 9.0 | GO:0032463 | negative regulation of protein homooligomerization(GO:0032463) |
1.6 | 8.0 | GO:0072138 | mesenchymal cell proliferation involved in ureteric bud development(GO:0072138) |
0.1 | 7.7 | GO:0090277 | positive regulation of peptide hormone secretion(GO:0090277) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 213.2 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 46.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.5 | 16.2 | GO:0042588 | zymogen granule(GO:0042588) |
0.2 | 13.2 | GO:0005844 | polysome(GO:0005844) |
0.2 | 11.2 | GO:0030667 | secretory granule membrane(GO:0030667) |
0.2 | 10.1 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.6 | 9.9 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.4 | 9.6 | GO:0016327 | apicolateral plasma membrane(GO:0016327) |
0.4 | 8.1 | GO:0032426 | stereocilium tip(GO:0032426) |
0.4 | 8.0 | GO:0005751 | mitochondrial respiratory chain complex IV(GO:0005751) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 92.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.4 | 23.0 | GO:0005158 | insulin receptor binding(GO:0005158) |
0.5 | 17.5 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.1 | 15.5 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.3 | 15.1 | GO:0036374 | glutathione hydrolase activity(GO:0036374) |
0.0 | 14.1 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.6 | 12.7 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.5 | 12.4 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.1 | 12.3 | GO:0005179 | hormone activity(GO:0005179) |
3.8 | 11.5 | GO:0050253 | retinyl-palmitate esterase activity(GO:0050253) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 50.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 32.6 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 25.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 21.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.3 | 13.3 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.2 | 13.0 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 8.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.6 | 7.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.1 | 7.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 6.8 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 24.2 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.2 | 21.5 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.7 | 18.4 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.7 | 15.6 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.3 | 13.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.1 | 9.1 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
0.5 | 9.0 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.1 | 8.8 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.4 | 8.5 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.1 | 7.4 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |