avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Sox4 | mm10_v2_chr13_-_28953690_28953713 | 0.71 | 1.5e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_103853199 Show fit | 16.95 |
ENSMUST00000033229.3
|
hemoglobin Y, beta-like embryonic chain |
|
chrX_+_73639414 Show fit | 16.81 |
ENSMUST00000019701.8
|
dual specificity phosphatase 9 |
|
chr4_+_115057683 Show fit | 13.52 |
ENSMUST00000161601.1
|
T cell acute lymphocytic leukemia 1 |
|
chr9_-_103480328 Show fit | 11.39 |
ENSMUST00000124310.2
|
beaded filament structural protein 2, phakinin |
|
chr15_+_102296256 Show fit | 9.38 |
ENSMUST00000064924.4
|
extra spindle poles-like 1 (S. cerevisiae) |
|
chr5_+_115908644 Show fit | 9.10 |
ENSMUST00000141101.1
|
citron |
|
chr15_-_79285502 Show fit | 8.70 |
ENSMUST00000165408.1
|
BAI1-associated protein 2-like 2 |
|
chr7_+_45216671 Show fit | 8.32 |
ENSMUST00000134420.1
|
TEA domain family member 2 |
|
chr7_+_100493795 Show fit | 8.14 |
ENSMUST00000129324.1
|
uncoupling protein 2 (mitochondrial, proton carrier) |
|
chr7_-_100514800 Show fit | 8.06 |
ENSMUST00000054923.7
|
DnaJ (Hsp40) related, subfamily B, member 13 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 16.9 | GO:0015671 | oxygen transport(GO:0015671) |
0.8 | 16.8 | GO:0000188 | inactivation of MAPK activity(GO:0000188) |
0.7 | 16.6 | GO:2000251 | positive regulation of actin cytoskeleton reorganization(GO:2000251) |
0.9 | 15.3 | GO:0061179 | negative regulation of insulin secretion involved in cellular response to glucose stimulus(GO:0061179) |
4.5 | 13.5 | GO:0060217 | hemangioblast cell differentiation(GO:0060217) |
0.1 | 13.2 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.7 | 12.7 | GO:0070307 | lens fiber cell development(GO:0070307) |
0.6 | 9.4 | GO:0000212 | meiotic spindle organization(GO:0000212) |
0.1 | 9.2 | GO:0055092 | cholesterol homeostasis(GO:0042632) sterol homeostasis(GO:0055092) |
0.4 | 9.1 | GO:0050774 | negative regulation of dendrite morphogenesis(GO:0050774) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 16.9 | GO:0005833 | hemoglobin complex(GO:0005833) |
1.4 | 16.6 | GO:0071439 | clathrin complex(GO:0071439) |
0.3 | 14.5 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
4.5 | 13.5 | GO:0033193 | Lsd1/2 complex(GO:0033193) |
0.1 | 12.7 | GO:0005882 | intermediate filament(GO:0005882) |
0.0 | 11.8 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 11.0 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.1 | 9.4 | GO:0072686 | mitotic spindle(GO:0072686) |
2.8 | 8.3 | GO:0071149 | TEAD-2-YAP complex(GO:0071149) |
0.0 | 7.1 | GO:0000139 | Golgi membrane(GO:0000139) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.2 | 16.9 | GO:0031721 | hemoglobin alpha binding(GO:0031721) |
1.1 | 16.8 | GO:0017017 | MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017) |
2.6 | 15.7 | GO:0017077 | oxidative phosphorylation uncoupler activity(GO:0017077) |
0.0 | 13.6 | GO:0005543 | phospholipid binding(GO:0005543) |
0.2 | 13.5 | GO:0070888 | E-box binding(GO:0070888) |
0.6 | 12.7 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 9.4 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.4 | 9.2 | GO:0017128 | phospholipid scramblase activity(GO:0017128) |
0.1 | 9.1 | GO:0097110 | scaffold protein binding(GO:0097110) |
0.4 | 8.3 | GO:0001134 | transcription factor activity, transcription factor recruiting(GO:0001134) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 16.8 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.2 | 16.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 9.1 | PID RHOA PATHWAY | RhoA signaling pathway |
0.0 | 4.9 | PID E2F PATHWAY | E2F transcription factor network |
0.1 | 4.8 | PID ERBB1 INTERNALIZATION PATHWAY | Internalization of ErbB1 |
0.0 | 4.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 4.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 3.4 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 1.3 | PID NEPHRIN NEPH1 PATHWAY | Nephrin/Neph1 signaling in the kidney podocyte |
0.0 | 1.3 | PID WNT CANONICAL PATHWAY | Canonical Wnt signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.2 | 8.3 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.3 | 7.4 | REACTOME ACYL CHAIN REMODELLING OF PC | Genes involved in Acyl chain remodelling of PC |
0.2 | 6.3 | REACTOME BASIGIN INTERACTIONS | Genes involved in Basigin interactions |
0.2 | 6.3 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.2 | 6.0 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.2 | 5.8 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.2 | 5.2 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.2 | 4.9 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.1 | 4.8 | REACTOME EGFR DOWNREGULATION | Genes involved in EGFR downregulation |