avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Sox6 | mm10_v2_chr7_-_116031047_116031122 | 0.56 | 3.5e-04 | Click! |
Sox9 | mm10_v2_chr11_+_112782182_112782248 | 0.19 | 2.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_-_103480328 Show fit | 2.29 |
ENSMUST00000124310.2
|
beaded filament structural protein 2, phakinin |
|
chr11_-_99438143 Show fit | 2.24 |
ENSMUST00000017743.2
|
keratin 20 |
|
chr7_-_142666816 Show fit | 2.07 |
ENSMUST00000105935.1
|
insulin-like growth factor 2 |
|
chr6_+_86628174 Show fit | 2.05 |
ENSMUST00000043400.6
|
aspartic peptidase, retroviral-like 1 |
|
chr8_+_123411424 Show fit | 1.96 |
ENSMUST00000071134.3
|
tubulin, beta 3 class III |
|
chr7_+_45216671 Show fit | 1.85 |
ENSMUST00000134420.1
|
TEA domain family member 2 |
|
chrX_+_73639414 Show fit | 1.79 |
ENSMUST00000019701.8
|
dual specificity phosphatase 9 |
|
chr12_+_24831583 Show fit | 1.60 |
ENSMUST00000110942.3
ENSMUST00000078902.6 |
membrane bound O-acyltransferase domain containing 2 |
|
chr17_-_79355082 Show fit | 1.39 |
ENSMUST00000068958.7
|
CDC42 effector protein (Rho GTPase binding) 3 |
|
chr6_+_86404336 Show fit | 1.38 |
ENSMUST00000113713.2
ENSMUST00000113708.1 |
cytotoxic granule-associated RNA binding protein 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.2 | GO:1903608 | protein localization to cytoplasmic stress granule(GO:1903608) |
0.5 | 3.3 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
0.1 | 2.5 | GO:0060216 | definitive hemopoiesis(GO:0060216) |
0.0 | 2.4 | GO:0008654 | phospholipid biosynthetic process(GO:0008654) |
0.1 | 2.3 | GO:0070307 | lens fiber cell development(GO:0070307) |
0.7 | 2.2 | GO:0060217 | hemangioblast cell differentiation(GO:0060217) |
0.1 | 2.2 | GO:0045109 | intermediate filament organization(GO:0045109) |
0.3 | 2.1 | GO:0038028 | insulin receptor signaling pathway via phosphatidylinositol 3-kinase(GO:0038028) |
0.1 | 1.8 | GO:0061179 | negative regulation of insulin secretion involved in cellular response to glucose stimulus(GO:0061179) |
0.1 | 1.8 | GO:0000188 | inactivation of MAPK activity(GO:0000188) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.7 | GO:0005882 | intermediate filament(GO:0005882) |
0.5 | 4.2 | GO:0097165 | nuclear stress granule(GO:0097165) |
0.1 | 2.3 | GO:0043205 | microfibril(GO:0001527) fibril(GO:0043205) |
0.7 | 2.2 | GO:0033193 | Lsd1/2 complex(GO:0033193) |
0.6 | 1.8 | GO:0071149 | TEAD-2-YAP complex(GO:0071149) |
0.2 | 1.7 | GO:0001739 | sex chromatin(GO:0001739) |
0.0 | 1.5 | GO:0043034 | costamere(GO:0043034) |
0.0 | 1.3 | GO:0097546 | ciliary base(GO:0097546) |
0.1 | 1.2 | GO:0005641 | nuclear envelope lumen(GO:0005641) |
0.1 | 1.1 | GO:0031618 | nuclear pericentric heterochromatin(GO:0031618) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.0 | GO:0017091 | AU-rich element binding(GO:0017091) |
0.5 | 3.3 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.0 | 3.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.0 | 2.4 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.1 | 2.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.1 | 2.1 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
0.1 | 2.1 | GO:0005159 | insulin-like growth factor receptor binding(GO:0005159) |
0.5 | 1.9 | GO:0030023 | extracellular matrix constituent conferring elasticity(GO:0030023) |
0.0 | 1.9 | GO:0030374 | ligand-dependent nuclear receptor transcription coactivator activity(GO:0030374) |
0.3 | 1.8 | GO:0017077 | oxidative phosphorylation uncoupler activity(GO:0017077) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 2.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.0 | 1.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 1.6 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.0 | 1.5 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 1.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.9 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.1 | 0.8 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.0 | 0.8 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.0 | 0.8 | NABA COLLAGENS | Genes encoding collagen proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.3 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.1 | 2.0 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
0.0 | 1.8 | REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS | Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. |
0.0 | 1.7 | REACTOME YAP1 AND WWTR1 TAZ STIMULATED GENE EXPRESSION | Genes involved in YAP1- and WWTR1 (TAZ)-stimulated gene expression |
0.0 | 1.7 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.1 | 1.6 | REACTOME ACYL CHAIN REMODELLING OF PC | Genes involved in Acyl chain remodelling of PC |
0.0 | 0.9 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
0.0 | 0.9 | REACTOME SIGNAL ATTENUATION | Genes involved in Signal attenuation |
0.0 | 0.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 0.9 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |