avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Sp100 | mm10_v2_chr1_+_85650008_85650020 | -0.42 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_3023547 Show fit | 3.33 |
ENSMUST00000099046.3
|
predicted gene 10718 |
|
chr2_-_98667264 Show fit | 3.27 |
ENSMUST00000099683.1
|
predicted gene 10800 |
|
chr9_+_3013140 Show fit | 3.23 |
ENSMUST00000143083.2
|
predicted gene 10721 |
|
chrX_-_61185558 Show fit | 2.98 |
ENSMUST00000166381.1
|
cerebellar degeneration related antigen 1 |
|
chr14_+_65806066 Show fit | 2.57 |
ENSMUST00000139644.1
|
PDZ binding kinase |
|
chr14_-_19418930 Show fit | 2.30 |
ENSMUST00000177817.1
|
predicted gene, 21738 |
|
chr9_+_3000922 Show fit | 2.22 |
ENSMUST00000151376.2
|
predicted gene 10722 |
|
chr9_+_3025417 Show fit | 2.13 |
ENSMUST00000075573.6
|
predicted gene 10717 |
|
chr8_-_4779513 Show fit | 2.11 |
ENSMUST00000022945.7
|
Shc SH2-domain binding protein 1 |
|
chr9_+_3017408 Show fit | 2.10 |
ENSMUST00000099049.3
|
predicted gene 10719 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.1 | GO:0032873 | negative regulation of stress-activated MAPK cascade(GO:0032873) negative regulation of stress-activated protein kinase signaling cascade(GO:0070303) |
0.0 | 2.1 | GO:0008543 | fibroblast growth factor receptor signaling pathway(GO:0008543) |
0.3 | 2.0 | GO:0031508 | pericentric heterochromatin assembly(GO:0031508) |
0.2 | 1.6 | GO:1990169 | detoxification of copper ion(GO:0010273) stress response to copper ion(GO:1990169) |
0.2 | 1.4 | GO:0051987 | positive regulation of attachment of spindle microtubules to kinetochore(GO:0051987) |
0.2 | 1.4 | GO:0006975 | DNA damage induced protein phosphorylation(GO:0006975) |
0.0 | 1.3 | GO:2000279 | negative regulation of DNA biosynthetic process(GO:2000279) |
0.0 | 1.2 | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I(GO:0002474) |
0.0 | 1.1 | GO:0010569 | regulation of double-strand break repair via homologous recombination(GO:0010569) |
0.1 | 1.0 | GO:0006228 | UTP biosynthetic process(GO:0006228) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.7 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.1 | 1.4 | GO:1990023 | condensed chromosome outer kinetochore(GO:0000940) mitotic spindle midzone(GO:1990023) |
0.0 | 1.4 | GO:0005721 | pericentric heterochromatin(GO:0005721) |
0.0 | 1.4 | GO:0005657 | replication fork(GO:0005657) |
0.4 | 1.2 | GO:0031417 | NatC complex(GO:0031417) |
0.0 | 1.2 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 1.2 | GO:0072686 | mitotic spindle(GO:0072686) |
0.1 | 1.0 | GO:0045298 | tubulin complex(GO:0045298) |
0.1 | 1.0 | GO:0010369 | chromocenter(GO:0010369) |
0.1 | 0.9 | GO:0044666 | MLL3/4 complex(GO:0044666) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 2.1 | GO:0004027 | alcohol sulfotransferase activity(GO:0004027) |
0.0 | 1.9 | GO:0042169 | SH2 domain binding(GO:0042169) |
0.0 | 1.8 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.0 | 1.6 | GO:0005507 | copper ion binding(GO:0005507) |
0.5 | 1.4 | GO:0035402 | histone kinase activity (H3-T11 specific)(GO:0035402) |
0.3 | 1.4 | GO:0043515 | kinetochore binding(GO:0043515) |
0.0 | 1.2 | GO:0042605 | peptide antigen binding(GO:0042605) |
0.2 | 1.0 | GO:0061649 | ubiquitinated histone binding(GO:0061649) |
0.0 | 1.0 | GO:0004550 | nucleoside diphosphate kinase activity(GO:0004550) |
0.0 | 1.0 | GO:0008146 | sulfotransferase activity(GO:0008146) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.5 | PID PLK1 PATHWAY | PLK1 signaling events |
0.2 | 1.4 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.0 | 1.4 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 1.1 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 0.7 | PID IL2 STAT5 PATHWAY | IL2 signaling events mediated by STAT5 |
0.0 | 0.6 | PID DNA PK PATHWAY | DNA-PK pathway in nonhomologous end joining |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.0 | 1.6 | REACTOME ER PHAGOSOME PATHWAY | Genes involved in ER-Phagosome pathway |
0.1 | 1.4 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
0.0 | 1.1 | REACTOME RIP MEDIATED NFKB ACTIVATION VIA DAI | Genes involved in RIP-mediated NFkB activation via DAI |
0.0 | 0.9 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.0 | 0.9 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
0.0 | 0.7 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
0.0 | 0.7 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.0 | 0.7 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.0 | 0.6 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |