avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Spic | mm10_v2_chr10_-_88683021_88683025 | 0.93 | 1.2e-16 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_106167564 Show fit | 37.33 |
ENSMUST00000063062.8
|
chitinase 3-like 3 |
|
chrX_-_7964166 Show fit | 33.57 |
ENSMUST00000128449.1
|
GATA binding protein 1 |
|
chr11_+_87793470 Show fit | 29.82 |
ENSMUST00000020779.4
|
myeloperoxidase |
|
chr11_+_87793722 Show fit | 28.52 |
ENSMUST00000143021.2
|
myeloperoxidase |
|
chr10_+_79879614 Show fit | 25.08 |
ENSMUST00000006679.8
|
proteinase 3 |
|
chr14_+_80000292 Show fit | 23.89 |
ENSMUST00000088735.3
|
olfactomedin 4 |
|
chr9_+_7558429 Show fit | 19.80 |
ENSMUST00000018765.2
|
matrix metallopeptidase 8 |
|
chr1_-_144775419 Show fit | 18.01 |
ENSMUST00000027603.3
|
regulator of G-protein signaling 18 |
|
chr8_+_70373541 Show fit | 17.24 |
ENSMUST00000003659.7
|
cartilage oligomeric matrix protein |
|
chr7_-_122132844 Show fit | 16.16 |
ENSMUST00000106469.1
ENSMUST00000063587.6 ENSMUST00000106468.1 ENSMUST00000130149.1 ENSMUST00000098068.3 |
partner and localizer of BRCA2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
19.4 | 58.3 | GO:0002148 | hypochlorous acid metabolic process(GO:0002148) hypochlorous acid biosynthetic process(GO:0002149) |
3.4 | 34.3 | GO:0006268 | DNA unwinding involved in DNA replication(GO:0006268) |
5.7 | 34.1 | GO:0032796 | uropod organization(GO:0032796) |
11.2 | 33.6 | GO:0030221 | basophil differentiation(GO:0030221) |
5.5 | 27.6 | GO:2000660 | negative regulation of interleukin-1-mediated signaling pathway(GO:2000660) |
1.5 | 26.5 | GO:0015816 | glycine transport(GO:0015816) |
5.0 | 25.1 | GO:0097029 | mature conventional dendritic cell differentiation(GO:0097029) |
0.4 | 23.7 | GO:1900026 | positive regulation of substrate adhesion-dependent cell spreading(GO:1900026) |
2.3 | 22.6 | GO:0030886 | negative regulation of myeloid dendritic cell activation(GO:0030886) |
2.6 | 20.7 | GO:1901164 | negative regulation of trophoblast cell migration(GO:1901164) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 68.6 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 63.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
3.6 | 58.3 | GO:0042582 | primary lysosome(GO:0005766) azurophil granule(GO:0042582) |
0.0 | 38.7 | GO:0005886 | plasma membrane(GO:0005886) |
0.3 | 38.1 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
2.3 | 35.2 | GO:0042555 | MCM complex(GO:0042555) |
1.5 | 34.1 | GO:0032426 | stereocilium tip(GO:0032426) |
2.8 | 30.8 | GO:0043020 | NADPH oxidase complex(GO:0043020) |
0.7 | 29.0 | GO:0008305 | integrin complex(GO:0008305) |
2.5 | 25.4 | GO:0042581 | specific granule(GO:0042581) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 54.4 | GO:0004601 | peroxidase activity(GO:0004601) |
0.1 | 45.0 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.2 | 43.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.5 | 34.1 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
2.1 | 33.6 | GO:0008301 | DNA binding, bending(GO:0008301) |
0.7 | 29.8 | GO:0004003 | ATP-dependent DNA helicase activity(GO:0004003) |
0.0 | 26.7 | GO:0003779 | actin binding(GO:0003779) |
1.9 | 26.5 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
0.0 | 26.0 | GO:0003682 | chromatin binding(GO:0003682) |
0.4 | 24.9 | GO:0001784 | phosphotyrosine binding(GO:0001784) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 59.3 | PID IL23 PATHWAY | IL23-mediated signaling events |
1.1 | 53.8 | PID ATR PATHWAY | ATR signaling pathway |
0.5 | 32.9 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
0.9 | 29.0 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
0.1 | 26.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.6 | 24.5 | PID EPO PATHWAY | EPO signaling pathway |
0.3 | 24.2 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.2 | 22.7 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.5 | 20.6 | PID AURORA A PATHWAY | Aurora A signaling |
0.3 | 17.6 | PID LKB1 PATHWAY | LKB1 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 53.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
2.2 | 35.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.1 | 31.2 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.3 | 30.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.5 | 28.5 | REACTOME GPVI MEDIATED ACTIVATION CASCADE | Genes involved in GPVI-mediated activation cascade |
0.6 | 26.5 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
1.0 | 17.5 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
0.4 | 16.8 | REACTOME LATENT INFECTION OF HOMO SAPIENS WITH MYCOBACTERIUM TUBERCULOSIS | Genes involved in Latent infection of Homo sapiens with Mycobacterium tuberculosis |
0.3 | 16.8 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
0.6 | 16.2 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |