avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Stat2 | mm10_v2_chr10_+_128270546_128270577 | 0.71 | 1.0e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_77729091 Show fit | 12.27 |
ENSMUST00000109775.2
|
apolipoprotein L 9b |
|
chr6_+_41521782 Show fit | 9.31 |
ENSMUST00000070380.4
|
protease, serine, 2 |
|
chr15_-_77411034 Show fit | 8.03 |
ENSMUST00000089452.5
ENSMUST00000081776.3 |
apolipoprotein L 9a |
|
chr7_-_141010759 Show fit | 7.50 |
ENSMUST00000026565.6
|
interferon induced transmembrane protein 3 |
|
chr1_+_130826762 Show fit | 6.94 |
ENSMUST00000133792.1
|
polymeric immunoglobulin receptor |
|
chr1_+_130826676 Show fit | 6.61 |
ENSMUST00000027675.7
|
polymeric immunoglobulin receptor |
|
chr1_+_167618246 Show fit | 6.59 |
ENSMUST00000111380.1
|
retinoid X receptor gamma |
|
chr10_+_40629987 Show fit | 6.31 |
ENSMUST00000019977.7
|
D-aspartate oxidase |
|
chr6_+_41392356 Show fit | 6.24 |
ENSMUST00000049079.7
|
predicted gene 5771 |
|
chr4_-_42756543 Show fit | 6.04 |
ENSMUST00000102957.3
|
chemokine (C-C motif) ligand 19 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 23.2 | GO:0035455 | response to interferon-alpha(GO:0035455) |
0.4 | 16.3 | GO:0035456 | response to interferon-beta(GO:0035456) |
3.4 | 13.6 | GO:0002415 | immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor(GO:0002415) |
0.2 | 11.7 | GO:0048247 | lymphocyte chemotaxis(GO:0048247) |
0.1 | 10.4 | GO:0007586 | digestion(GO:0007586) |
3.3 | 10.0 | GO:2000547 | regulation of dendritic cell dendrite assembly(GO:2000547) |
0.6 | 9.3 | GO:0031000 | response to caffeine(GO:0031000) |
0.2 | 8.7 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
2.7 | 8.0 | GO:1990166 | protein localization to site of double-strand break(GO:1990166) |
0.6 | 7.9 | GO:0060340 | positive regulation of type I interferon-mediated signaling pathway(GO:0060340) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 53.5 | GO:0005615 | extracellular space(GO:0005615) |
0.3 | 13.6 | GO:0055038 | recycling endosome membrane(GO:0055038) |
0.9 | 12.7 | GO:0020003 | symbiont-containing vacuole(GO:0020003) |
0.0 | 12.0 | GO:0045177 | apical part of cell(GO:0045177) |
0.1 | 8.1 | GO:0072562 | blood microparticle(GO:0072562) |
0.2 | 6.5 | GO:0035861 | site of double-strand break(GO:0035861) |
0.1 | 6.5 | GO:0031901 | early endosome membrane(GO:0031901) |
0.0 | 6.5 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.0 | 6.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.7 | 5.5 | GO:0042825 | TAP complex(GO:0042825) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 25.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 19.0 | GO:0003924 | GTPase activity(GO:0003924) |
0.5 | 16.9 | GO:0008009 | chemokine activity(GO:0008009) |
1.5 | 14.7 | GO:0019763 | immunoglobulin receptor activity(GO:0019763) |
0.8 | 9.3 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.0 | 9.1 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.9 | 8.0 | GO:0003909 | DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910) |
0.1 | 6.9 | GO:0020037 | heme binding(GO:0020037) |
0.7 | 6.6 | GO:0004886 | 9-cis retinoic acid receptor activity(GO:0004886) |
1.6 | 6.3 | GO:0003884 | D-amino-acid oxidase activity(GO:0003884) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 15.9 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 12.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 11.8 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.1 | 6.6 | PID RETINOIC ACID PATHWAY | Retinoic acid receptors-mediated signaling |
0.1 | 6.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 5.8 | PID IL1 PATHWAY | IL1-mediated signaling events |
0.1 | 5.3 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.1 | 5.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 5.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 4.6 | ST G ALPHA S PATHWAY | G alpha s Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 12.7 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 9.6 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.8 | 9.3 | REACTOME DEFENSINS | Genes involved in Defensins |
0.2 | 7.5 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.3 | 6.3 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.3 | 6.0 | REACTOME TRAF3 DEPENDENT IRF ACTIVATION PATHWAY | Genes involved in TRAF3-dependent IRF activation pathway |
0.2 | 5.6 | REACTOME RIP MEDIATED NFKB ACTIVATION VIA DAI | Genes involved in RIP-mediated NFkB activation via DAI |
0.1 | 5.3 | REACTOME IL1 SIGNALING | Genes involved in Interleukin-1 signaling |
0.1 | 5.2 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.3 | 4.9 | REACTOME REGULATION OF IFNA SIGNALING | Genes involved in Regulation of IFNA signaling |