avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Taf1 | mm10_v2_chrX_+_101532734_101532777 | 0.38 | 2.2e-02 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.3 | 11.7 | GO:1905150 | regulation of voltage-gated sodium channel activity(GO:1905150) |
0.3 | 8.8 | GO:0035634 | response to stilbenoid(GO:0035634) |
0.8 | 8.6 | GO:1900246 | positive regulation of RIG-I signaling pathway(GO:1900246) |
1.2 | 8.2 | GO:0090234 | regulation of kinetochore assembly(GO:0090234) |
1.0 | 8.2 | GO:0071557 | histone H3-K27 demethylation(GO:0071557) |
1.9 | 7.6 | GO:1902528 | regulation of protein linear polyubiquitination(GO:1902528) positive regulation of protein linear polyubiquitination(GO:1902530) |
1.1 | 7.6 | GO:0030242 | pexophagy(GO:0030242) |
0.9 | 7.4 | GO:0000395 | mRNA 5'-splice site recognition(GO:0000395) |
0.7 | 7.4 | GO:0032876 | negative regulation of DNA endoreduplication(GO:0032876) |
0.2 | 7.4 | GO:0006376 | mRNA splice site selection(GO:0006376) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 33.7 | GO:0005739 | mitochondrion(GO:0005739) |
0.3 | 14.7 | GO:0005684 | U2-type spliceosomal complex(GO:0005684) |
0.9 | 13.9 | GO:0030877 | beta-catenin destruction complex(GO:0030877) |
0.0 | 12.6 | GO:0005815 | microtubule organizing center(GO:0005815) |
0.2 | 12.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.1 | 11.5 | GO:0071013 | catalytic step 2 spliceosome(GO:0071013) |
0.1 | 10.6 | GO:0005814 | centriole(GO:0005814) |
1.2 | 10.5 | GO:0005850 | eukaryotic translation initiation factor 2 complex(GO:0005850) |
2.6 | 10.3 | GO:1990590 | ATF1-ATF4 transcription factor complex(GO:1990590) |
0.0 | 9.2 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 30.0 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.4 | 20.7 | GO:0003743 | translation initiation factor activity(GO:0003743) |
0.1 | 13.2 | GO:0101005 | thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.2 | 11.5 | GO:0043027 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) |
0.1 | 11.3 | GO:0003730 | mRNA 3'-UTR binding(GO:0003730) |
1.5 | 9.3 | GO:0044547 | DNA topoisomerase binding(GO:0044547) |
0.1 | 8.9 | GO:0051219 | phosphoprotein binding(GO:0051219) |
0.3 | 8.8 | GO:0005550 | pheromone binding(GO:0005550) |
1.4 | 8.3 | GO:0097016 | L27 domain binding(GO:0097016) |
0.5 | 8.2 | GO:0016929 | SUMO-specific protease activity(GO:0016929) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 16.3 | ST P38 MAPK PATHWAY | p38 MAPK Pathway |
0.2 | 14.1 | PID FOXO PATHWAY | FoxO family signaling |
0.4 | 12.4 | PID BETA CATENIN DEG PATHWAY | Degradation of beta catenin |
0.3 | 8.1 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.2 | 7.7 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.1 | 7.2 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.1 | 6.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 5.9 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 5.5 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.1 | 5.5 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 20.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
0.2 | 16.2 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.4 | 13.7 | REACTOME NUCLEAR EVENTS KINASE AND TRANSCRIPTION FACTOR ACTIVATION | Genes involved in Nuclear Events (kinase and transcription factor activation) |
0.1 | 12.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.5 | 11.6 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
0.2 | 11.0 | REACTOME ASSOCIATION OF TRIC CCT WITH TARGET PROTEINS DURING BIOSYNTHESIS | Genes involved in Association of TriC/CCT with target proteins during biosynthesis |
0.3 | 10.0 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.2 | 9.9 | REACTOME MRNA 3 END PROCESSING | Genes involved in mRNA 3'-end processing |
0.5 | 9.6 | REACTOME CTNNB1 PHOSPHORYLATION CASCADE | Genes involved in Beta-catenin phosphorylation cascade |
0.4 | 8.0 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |