avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tal1 | mm10_v2_chr4_+_115059507_115059553 | 0.97 | 3.0e-22 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_132367879 Show fit | 62.65 |
ENSMUST00000142609.1
|
transmembrane and coiled-coil domains 2 |
|
chr14_-_43875517 Show fit | 60.38 |
ENSMUST00000179200.1
|
eosinophil-associated, ribonuclease A family, member 1 |
|
chr6_+_86078070 Show fit | 58.34 |
ENSMUST00000032069.5
|
adducin 2 (beta) |
|
chr4_-_119189949 Show fit | 49.25 |
ENSMUST00000124626.1
|
erythroblast membrane-associated protein |
|
chr15_-_103251465 Show fit | 49.22 |
ENSMUST00000133600.1
ENSMUST00000134554.1 ENSMUST00000156927.1 ENSMUST00000149111.1 ENSMUST00000132836.1 |
nuclear factor, erythroid derived 2 |
|
chr17_+_40811089 Show fit | 48.77 |
ENSMUST00000024721.7
|
Rhesus blood group-associated A glycoprotein |
|
chr7_-_103853199 Show fit | 48.10 |
ENSMUST00000033229.3
|
hemoglobin Y, beta-like embryonic chain |
|
chr4_+_134864536 Show fit | 40.10 |
ENSMUST00000030627.7
|
Rh blood group, D antigen |
|
chr14_-_43819639 Show fit | 39.84 |
ENSMUST00000100691.3
|
eosinophil-associated, ribonuclease A family, member 1 |
|
chr1_+_174172738 Show fit | 38.09 |
ENSMUST00000027817.7
|
spectrin alpha, erythrocytic 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.9 | 119.0 | GO:0015671 | oxygen transport(GO:0015671) |
29.6 | 88.9 | GO:0072488 | ammonium transmembrane transport(GO:0072488) |
4.2 | 67.6 | GO:0019886 | antigen processing and presentation of exogenous peptide antigen via MHC class II(GO:0019886) |
2.9 | 65.9 | GO:0038065 | collagen-activated signaling pathway(GO:0038065) |
1.0 | 62.6 | GO:0042982 | amyloid precursor protein metabolic process(GO:0042982) |
2.1 | 58.3 | GO:0051016 | barbed-end actin filament capping(GO:0051016) |
8.5 | 50.8 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
4.1 | 49.2 | GO:0034242 | negative regulation of syncytium formation by plasma membrane fusion(GO:0034242) |
0.2 | 45.9 | GO:0007596 | blood coagulation(GO:0007596) |
1.8 | 40.6 | GO:0046597 | negative regulation of viral entry into host cell(GO:0046597) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.9 | 119.0 | GO:0005833 | hemoglobin complex(GO:0005833) |
0.1 | 112.9 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.2 | 71.0 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.1 | 64.7 | GO:0031410 | cytoplasmic vesicle(GO:0031410) |
0.4 | 62.7 | GO:0032993 | protein-DNA complex(GO:0032993) |
5.8 | 58.3 | GO:0008290 | F-actin capping protein complex(GO:0008290) |
0.1 | 43.0 | GO:0015629 | actin cytoskeleton(GO:0015629) |
0.2 | 40.9 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
6.3 | 38.1 | GO:0032437 | cuticular plate(GO:0032437) |
0.1 | 33.1 | GO:0031965 | nuclear membrane(GO:0031965) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 162.4 | GO:0004540 | ribonuclease activity(GO:0004540) |
14.9 | 119.0 | GO:0005344 | oxygen transporter activity(GO:0005344) |
3.5 | 102.6 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
0.4 | 72.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
2.4 | 67.6 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
0.7 | 52.1 | GO:0030507 | spectrin binding(GO:0030507) |
7.1 | 49.4 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
1.0 | 49.2 | GO:0050699 | WW domain binding(GO:0050699) |
0.1 | 41.2 | GO:0008047 | enzyme activator activity(GO:0008047) |
0.2 | 36.1 | GO:0047485 | protein N-terminus binding(GO:0047485) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 97.1 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.4 | 40.7 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
1.1 | 37.7 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.8 | 32.6 | PID IL8 CXCR1 PATHWAY | IL8- and CXCR1-mediated signaling events |
1.9 | 30.5 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.6 | 27.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 19.8 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.3 | 18.9 | PID RHOA PATHWAY | RhoA signaling pathway |
0.4 | 16.6 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.4 | 13.2 | PID EPO PATHWAY | EPO signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.7 | 55.8 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |
3.7 | 55.5 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
1.1 | 44.6 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.3 | 37.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
1.3 | 37.5 | REACTOME GENERATION OF SECOND MESSENGER MOLECULES | Genes involved in Generation of second messenger molecules |
0.8 | 33.1 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.8 | 27.9 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
1.5 | 27.8 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.1 | 27.1 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.2 | 25.3 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |