avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tbp | mm10_v2_chr17_+_15499888_15499960 | 0.50 | 1.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_-_36455378 Show fit | 41.31 |
ENSMUST00000068182.2
|
stefin A3 |
|
chr16_-_36367623 Show fit | 38.93 |
ENSMUST00000096089.2
|
cDNA sequence BC100530 |
|
chr16_+_36184082 Show fit | 33.68 |
ENSMUST00000114858.1
|
predicted gene 5483 |
|
chr16_+_36156801 Show fit | 32.28 |
ENSMUST00000079184.4
|
stefin A2 like 1 |
|
chr16_+_36277145 Show fit | 30.44 |
ENSMUST00000042097.9
|
stefin A1 |
|
chr14_+_80000292 Show fit | 28.31 |
ENSMUST00000088735.3
|
olfactomedin 4 |
|
chr9_+_98490522 Show fit | 26.57 |
ENSMUST00000035029.2
|
retinol binding protein 2, cellular |
|
chr11_+_87793470 Show fit | 26.45 |
ENSMUST00000020779.4
|
myeloperoxidase |
|
chr6_-_41314700 Show fit | 25.87 |
ENSMUST00000064324.5
|
trypsin 5 |
|
chr3_-_106167564 Show fit | 25.61 |
ENSMUST00000063062.8
|
chitinase 3-like 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 55.6 | GO:0007586 | digestion(GO:0007586) |
1.5 | 46.5 | GO:0006335 | DNA replication-dependent nucleosome assembly(GO:0006335) DNA replication-dependent nucleosome organization(GO:0034723) |
1.5 | 40.2 | GO:0045109 | intermediate filament organization(GO:0045109) |
3.9 | 31.5 | GO:0015671 | oxygen transport(GO:0015671) |
3.3 | 26.6 | GO:0006776 | vitamin A metabolic process(GO:0006776) |
8.8 | 26.4 | GO:0002148 | hypochlorous acid metabolic process(GO:0002148) hypochlorous acid biosynthetic process(GO:0002149) |
2.0 | 25.5 | GO:0002002 | regulation of angiotensin levels in blood(GO:0002002) |
8.3 | 24.8 | GO:0070488 | neutrophil aggregation(GO:0070488) |
1.3 | 24.6 | GO:0033275 | actin-myosin filament sliding(GO:0033275) |
1.9 | 23.4 | GO:0002679 | respiratory burst involved in defense response(GO:0002679) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.0 | 56.4 | GO:0005833 | hemoglobin complex(GO:0005833) |
0.5 | 54.2 | GO:0005882 | intermediate filament(GO:0005882) |
1.0 | 36.4 | GO:0000788 | nuclear nucleosome(GO:0000788) |
0.1 | 34.4 | GO:0030141 | secretory granule(GO:0030141) |
0.8 | 33.1 | GO:0000786 | nucleosome(GO:0000786) |
1.8 | 28.3 | GO:0042581 | specific granule(GO:0042581) |
2.6 | 26.4 | GO:0005766 | primary lysosome(GO:0005766) azurophil granule(GO:0042582) |
4.6 | 18.4 | GO:0097450 | astrocyte end-foot(GO:0097450) |
0.3 | 16.6 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.0 | 15.9 | GO:0000790 | nuclear chromatin(GO:0000790) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 122.6 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
14.1 | 56.4 | GO:0031721 | hemoglobin alpha binding(GO:0031721) |
1.1 | 53.4 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
1.1 | 33.6 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
2.0 | 27.5 | GO:0016918 | retinal binding(GO:0016918) |
3.1 | 24.8 | GO:0050786 | Toll-like receptor 4 binding(GO:0035662) RAGE receptor binding(GO:0050786) |
0.1 | 24.4 | GO:0045296 | cadherin binding(GO:0045296) |
1.9 | 23.4 | GO:0008430 | selenium binding(GO:0008430) |
0.4 | 23.0 | GO:0004601 | peroxidase activity(GO:0004601) |
0.1 | 22.4 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 43.1 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.5 | 25.7 | PID IL23 PATHWAY | IL23-mediated signaling events |
0.5 | 24.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.2 | 23.0 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.2 | 16.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.2 | 12.7 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 12.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 11.8 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 11.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.3 | 10.9 | PID INSULIN GLUCOSE PATHWAY | Insulin-mediated glucose transport |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 51.7 | REACTOME RNA POL I PROMOTER OPENING | Genes involved in RNA Polymerase I Promoter Opening |
0.5 | 27.5 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
1.5 | 24.0 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
1.0 | 20.6 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.3 | 18.6 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
0.5 | 18.2 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
2.1 | 17.2 | REACTOME HORMONE LIGAND BINDING RECEPTORS | Genes involved in Hormone ligand-binding receptors |
0.3 | 16.6 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.4 | 16.2 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |
0.5 | 16.0 | REACTOME AMINE COMPOUND SLC TRANSPORTERS | Genes involved in Amine compound SLC transporters |