avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tbx4 | mm10_v2_chr11_+_85886360_85886422 | -0.38 | 2.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_+_20601958 Show fit | 9.20 |
ENSMUST00000087638.3
|
aldehyde dehydrogenase family 1, subfamily A1 |
|
chr19_+_37697792 Show fit | 7.31 |
ENSMUST00000025946.5
|
cytochrome P450, family 26, subfamily a, polypeptide 1 |
|
chr10_+_87861309 Show fit | 5.37 |
ENSMUST00000122100.1
|
insulin-like growth factor 1 |
|
chr2_-_148045891 Show fit | 3.86 |
ENSMUST00000109964.1
|
forkhead box A2 |
|
chr7_-_100658394 Show fit | 3.80 |
ENSMUST00000138830.1
ENSMUST00000107044.3 ENSMUST00000116287.2 |
pleckstrin homology domain containing, family B (evectins) member 1 |
|
chr7_-_100658364 Show fit | 3.68 |
ENSMUST00000107043.1
|
pleckstrin homology domain containing, family B (evectins) member 1 |
|
chr19_-_42202150 Show fit | 3.17 |
ENSMUST00000018966.7
|
secreted frizzled-related sequence protein 5 |
|
chr2_+_164562579 Show fit | 2.94 |
ENSMUST00000017867.3
ENSMUST00000109344.2 ENSMUST00000109345.2 |
WAP four-disulfide core domain 2 |
|
chr4_+_43641262 Show fit | 2.83 |
ENSMUST00000123351.1
ENSMUST00000128549.1 |
natriuretic peptide receptor 2 |
|
chr16_-_23988852 Show fit | 2.61 |
ENSMUST00000023151.5
|
B cell leukemia/lymphoma 6 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 9.2 | GO:0042905 | 9-cis-retinoic acid biosynthetic process(GO:0042904) 9-cis-retinoic acid metabolic process(GO:0042905) |
1.8 | 7.3 | GO:0034653 | diterpenoid catabolic process(GO:0016103) retinoic acid catabolic process(GO:0034653) |
2.0 | 5.9 | GO:0045013 | carbon catabolite repression of transcription(GO:0045013) negative regulation of transcription by glucose(GO:0045014) |
0.9 | 5.4 | GO:1904075 | regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075) |
0.0 | 4.2 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) |
0.3 | 3.4 | GO:0007168 | receptor guanylyl cyclase signaling pathway(GO:0007168) |
0.3 | 3.4 | GO:0015868 | purine ribonucleotide transport(GO:0015868) |
1.1 | 3.2 | GO:2000040 | regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041) |
0.4 | 2.7 | GO:0008078 | mesodermal cell migration(GO:0008078) |
0.7 | 2.6 | GO:0048294 | regulation of memory T cell differentiation(GO:0043380) negative regulation of isotype switching to IgE isotypes(GO:0048294) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.5 | GO:0001750 | photoreceptor outer segment(GO:0001750) |
0.6 | 5.4 | GO:0035867 | alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567) |
0.0 | 2.9 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.1 | 2.8 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
0.0 | 2.6 | GO:0005657 | replication fork(GO:0005657) |
0.1 | 2.5 | GO:0005922 | connexon complex(GO:0005922) |
0.1 | 2.2 | GO:0005916 | fascia adherens(GO:0005916) |
0.2 | 2.1 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
0.1 | 2.1 | GO:0032839 | dendrite cytoplasm(GO:0032839) |
0.0 | 1.7 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.1 | 9.2 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
0.0 | 7.5 | GO:0008022 | protein C-terminus binding(GO:0008022) |
2.4 | 7.3 | GO:0008401 | retinoic acid 4-hydroxylase activity(GO:0008401) |
0.1 | 6.5 | GO:0001205 | transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205) |
0.1 | 5.4 | GO:0005159 | insulin-like growth factor receptor binding(GO:0005159) protein serine/threonine kinase activator activity(GO:0043539) |
0.1 | 3.2 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.0 | 3.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.6 | 2.9 | GO:0019828 | aspartic-type endopeptidase inhibitor activity(GO:0019828) |
0.1 | 2.9 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.2 | 2.6 | GO:0001161 | intronic transcription regulatory region sequence-specific DNA binding(GO:0001161) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 5.9 | PID IGF1 PATHWAY | IGF1 pathway |
0.0 | 2.7 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 2.6 | PID FOXO PATHWAY | FoxO family signaling |
0.0 | 2.2 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.0 | 2.1 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
0.0 | 1.3 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.1 | 1.0 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 1.0 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 0.7 | PID ERBB4 PATHWAY | ErbB4 signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 9.2 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.3 | 7.3 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.2 | 5.9 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.1 | 2.5 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
0.1 | 2.4 | REACTOME SYNTHESIS OF PC | Genes involved in Synthesis of PC |
0.1 | 2.2 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
0.2 | 2.1 | REACTOME ACTIVATION OF CHAPERONE GENES BY ATF6 ALPHA | Genes involved in Activation of Chaperone Genes by ATF6-alpha |
0.1 | 2.1 | REACTOME IONOTROPIC ACTIVITY OF KAINATE RECEPTORS | Genes involved in Ionotropic activity of Kainate Receptors |
0.0 | 1.7 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.1 | 1.6 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |