avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tcf3 | mm10_v2_chr10_-_80433615_80433655 | 0.85 | 3.4e-11 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_+_23139064 Show fit | 19.58 |
ENSMUST00000033947.8
|
ankyrin 1, erythroid |
|
chr8_+_23139030 Show fit | 18.24 |
ENSMUST00000121075.1
|
ankyrin 1, erythroid |
|
chr12_+_109459843 Show fit | 15.11 |
ENSMUST00000173812.1
|
delta-like 1 homolog (Drosophila) |
|
chr2_+_131186942 Show fit | 11.80 |
ENSMUST00000028804.8
ENSMUST00000079857.8 |
cell division cycle 25B |
|
chr11_-_102365111 Show fit | 8.80 |
ENSMUST00000006749.9
|
solute carrier family 4 (anion exchanger), member 1 |
|
chr6_+_30639218 Show fit | 8.76 |
ENSMUST00000031806.9
|
carboxypeptidase A1, pancreatic |
|
chr6_-_41377604 Show fit | 8.56 |
ENSMUST00000096003.5
|
protease, serine, 3 |
|
chr7_-_17056669 Show fit | 8.42 |
ENSMUST00000037762.4
|
hypoxia inducible factor 3, alpha subunit |
|
chr2_-_170406501 Show fit | 7.95 |
ENSMUST00000154650.1
|
breast carcinoma amplified sequence 1 |
|
chr1_+_75507077 Show fit | 7.95 |
ENSMUST00000037330.4
|
inhibin alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 48.6 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
0.1 | 18.1 | GO:0007586 | digestion(GO:0007586) |
0.5 | 15.1 | GO:0045780 | positive regulation of bone resorption(GO:0045780) positive regulation of bone remodeling(GO:0046852) |
1.5 | 11.8 | GO:0007144 | female meiosis I(GO:0007144) |
0.7 | 10.2 | GO:0097067 | cellular response to thyroid hormone stimulus(GO:0097067) |
0.2 | 9.8 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
0.3 | 8.8 | GO:0015701 | bicarbonate transport(GO:0015701) |
1.6 | 7.9 | GO:0046882 | negative regulation of follicle-stimulating hormone secretion(GO:0046882) |
0.4 | 7.6 | GO:1900151 | regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151) positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900153) |
0.7 | 7.5 | GO:0090527 | actin filament reorganization(GO:0090527) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 49.3 | GO:0005615 | extracellular space(GO:0005615) |
2.1 | 48.0 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.3 | 19.2 | GO:0031672 | A band(GO:0031672) |
1.0 | 17.3 | GO:0005861 | troponin complex(GO:0005861) |
0.1 | 9.1 | GO:0000922 | spindle pole(GO:0000922) |
0.1 | 8.9 | GO:0005819 | spindle(GO:0005819) |
0.7 | 8.5 | GO:0005862 | muscle thin filament tropomyosin(GO:0005862) |
0.0 | 8.3 | GO:0030427 | site of polarized growth(GO:0030427) |
2.6 | 7.9 | GO:0034673 | inhibin-betaglycan-ActRII complex(GO:0034673) |
0.1 | 7.7 | GO:0014704 | intercalated disc(GO:0014704) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.3 | 43.2 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.1 | 28.1 | GO:0008236 | serine-type peptidase activity(GO:0008236) |
0.1 | 17.5 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
0.5 | 15.5 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
1.6 | 12.6 | GO:0005094 | Rho GDP-dissociation inhibitor activity(GO:0005094) |
1.2 | 12.0 | GO:0031014 | troponin T binding(GO:0031014) |
0.3 | 11.0 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.2 | 10.2 | GO:0043425 | bHLH transcription factor binding(GO:0043425) |
0.4 | 8.8 | GO:0008510 | sodium:bicarbonate symporter activity(GO:0008510) |
0.0 | 8.5 | GO:0005096 | GTPase activator activity(GO:0005096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 20.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 14.7 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.6 | 12.3 | PID TCR RAS PATHWAY | Ras signaling in the CD4+ TCR pathway |
1.3 | 11.8 | SA G2 AND M PHASES | Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition. |
0.2 | 10.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.3 | 9.2 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.3 | 8.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.2 | 6.0 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.1 | 6.0 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.2 | 4.6 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 48.9 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.6 | 30.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.4 | 15.1 | REACTOME ACTIVATED NOTCH1 TRANSMITS SIGNAL TO THE NUCLEUS | Genes involved in Activated NOTCH1 Transmits Signal to the Nucleus |
0.7 | 11.8 | REACTOME CYCLIN A B1 ASSOCIATED EVENTS DURING G2 M TRANSITION | Genes involved in Cyclin A/B1 associated events during G2/M transition |
0.0 | 9.2 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.4 | 8.0 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.7 | 6.6 | REACTOME GLYCOPROTEIN HORMONES | Genes involved in Glycoprotein hormones |
0.2 | 6.5 | REACTOME ERK MAPK TARGETS | Genes involved in ERK/MAPK targets |
0.2 | 6.1 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
0.0 | 6.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |