avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tead4 | mm10_v2_chr6_-_128300738_128300823 | 0.79 | 1.1e-08 | Click! |
Tead3 | mm10_v2_chr17_-_28350747_28350820 | 0.52 | 1.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_-_43558386 Show fit | 15.14 |
ENSMUST00000130353.1
|
talin 1 |
|
chr16_+_38362205 Show fit | 12.58 |
ENSMUST00000023494.6
|
popeye domain containing 2 |
|
chr16_+_38362234 Show fit | 9.95 |
ENSMUST00000114739.1
|
popeye domain containing 2 |
|
chr8_-_85365317 Show fit | 9.15 |
ENSMUST00000034133.7
|
myosin light chain kinase 3 |
|
chr8_-_85365341 Show fit | 8.96 |
ENSMUST00000121972.1
|
myosin light chain kinase 3 |
|
chr17_-_35702297 Show fit | 8.02 |
ENSMUST00000135078.1
|
discoidin domain receptor family, member 1 |
|
chr3_-_90695706 Show fit | 7.63 |
ENSMUST00000069960.5
ENSMUST00000117167.1 |
S100 calcium binding protein A9 (calgranulin B) |
|
chr7_-_24760311 Show fit | 7.34 |
ENSMUST00000063956.5
|
CD177 antigen |
|
chr19_-_34255325 Show fit | 7.27 |
ENSMUST00000039631.8
|
actin, alpha 2, smooth muscle, aorta |
|
chr6_-_67535783 Show fit | 7.22 |
ENSMUST00000058178.4
|
tumor-associated calcium signal transducer 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.8 | 22.5 | GO:0060931 | sinoatrial node cell development(GO:0060931) |
3.0 | 18.1 | GO:0002528 | regulation of vascular permeability involved in acute inflammatory response(GO:0002528) |
1.5 | 17.8 | GO:0061302 | smooth muscle cell-matrix adhesion(GO:0061302) |
1.0 | 15.5 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
1.9 | 15.1 | GO:0007016 | cytoskeletal anchoring at plasma membrane(GO:0007016) |
1.7 | 15.0 | GO:0002432 | granuloma formation(GO:0002432) |
3.4 | 10.1 | GO:0035702 | monocyte homeostasis(GO:0035702) |
0.1 | 9.8 | GO:0032611 | interleukin-1 beta production(GO:0032611) |
0.6 | 9.3 | GO:2000096 | positive regulation of Wnt signaling pathway, planar cell polarity pathway(GO:2000096) |
0.1 | 8.8 | GO:0032781 | positive regulation of ATPase activity(GO:0032781) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 22.9 | GO:0032982 | muscle myosin complex(GO:0005859) myosin filament(GO:0032982) |
0.1 | 22.3 | GO:0042383 | sarcolemma(GO:0042383) |
0.1 | 20.9 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
1.4 | 15.0 | GO:0033093 | Weibel-Palade body(GO:0033093) |
0.3 | 14.6 | GO:0016459 | myosin complex(GO:0016459) |
0.1 | 14.6 | GO:0001726 | ruffle(GO:0001726) |
0.2 | 12.9 | GO:0009925 | basal plasma membrane(GO:0009925) |
0.2 | 9.4 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
1.0 | 7.3 | GO:0030485 | smooth muscle contractile fiber(GO:0030485) |
0.2 | 6.9 | GO:0005865 | striated muscle thin filament(GO:0005865) myofilament(GO:0036379) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 21.9 | GO:0030552 | cAMP binding(GO:0030552) |
2.6 | 18.1 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
2.0 | 17.8 | GO:0038062 | protein tyrosine kinase collagen receptor activity(GO:0038062) |
1.3 | 15.1 | GO:0030274 | LIM domain binding(GO:0030274) |
0.9 | 13.6 | GO:0097493 | structural molecule activity conferring elasticity(GO:0097493) |
0.1 | 13.6 | GO:0017137 | Rab GTPase binding(GO:0017137) |
0.0 | 10.5 | GO:0005509 | calcium ion binding(GO:0005509) |
1.3 | 10.4 | GO:0050786 | RAGE receptor binding(GO:0050786) |
0.3 | 10.1 | GO:0030506 | ankyrin binding(GO:0030506) |
0.2 | 9.0 | GO:0043027 | cysteine-type endopeptidase inhibitor activity involved in apoptotic process(GO:0043027) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 15.1 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.1 | 9.7 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 8.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.1 | 6.3 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.2 | 6.0 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
0.0 | 5.2 | PID PDGFRB PATHWAY | PDGFR-beta signaling pathway |
0.2 | 5.1 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.1 | 5.0 | PID IL2 STAT5 PATHWAY | IL2 signaling events mediated by STAT5 |
0.1 | 4.7 | PID RHOA PATHWAY | RhoA signaling pathway |
0.3 | 4.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 24.7 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.9 | 15.1 | REACTOME SEMA3A PLEXIN REPULSION SIGNALING BY INHIBITING INTEGRIN ADHESION | Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
0.2 | 10.1 | REACTOME PLATELET AGGREGATION PLUG FORMATION | Genes involved in Platelet Aggregation (Plug Formation) |
0.0 | 6.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 5.7 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 5.4 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.2 | 4.0 | REACTOME PYRUVATE METABOLISM | Genes involved in Pyruvate metabolism |
0.4 | 3.9 | REACTOME THE ACTIVATION OF ARYLSULFATASES | Genes involved in The activation of arylsulfatases |
0.1 | 3.9 | REACTOME MUSCLE CONTRACTION | Genes involved in Muscle contraction |
0.2 | 3.4 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |