avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tfap4 | mm10_v2_chr16_-_4559720_4559747 | -0.38 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_97417730 Show fit | 6.04 |
ENSMUST00000043077.7
|
thyroid hormone responsive |
|
chr9_+_74976096 Show fit | 3.71 |
ENSMUST00000081746.5
|
family with sequence similarity 214, member A |
|
chr16_+_91269759 Show fit | 3.61 |
ENSMUST00000056882.5
|
oligodendrocyte transcription factor 1 |
|
chr3_+_14863495 Show fit | 3.42 |
ENSMUST00000029076.4
|
carbonic anhydrase 3 |
|
chr7_+_107567445 Show fit | 3.35 |
ENSMUST00000120990.1
|
olfactomedin-like 1 |
|
chr16_+_48842552 Show fit | 2.79 |
ENSMUST00000023329.4
|
resistin like alpha |
|
chr19_-_4498574 Show fit | 2.36 |
ENSMUST00000048482.6
|
RIKEN cDNA 2010003K11 gene |
|
chr2_-_52335134 Show fit | 2.34 |
ENSMUST00000075301.3
|
nebulin |
|
chr16_+_43510267 Show fit | 2.18 |
ENSMUST00000114695.2
|
zinc finger and BTB domain containing 20 |
|
chr7_-_120202104 Show fit | 2.18 |
ENSMUST00000033198.5
|
crystallin, mu |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.0 | GO:0010866 | regulation of triglyceride biosynthetic process(GO:0010866) |
0.1 | 4.6 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.4 | 3.7 | GO:0035372 | protein localization to microtubule(GO:0035372) |
0.1 | 3.5 | GO:0051642 | centrosome localization(GO:0051642) |
0.1 | 3.4 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
0.1 | 3.1 | GO:0035458 | cellular response to interferon-beta(GO:0035458) |
0.0 | 2.7 | GO:0048663 | neuron fate commitment(GO:0048663) |
0.1 | 2.6 | GO:0048384 | retinoic acid receptor signaling pathway(GO:0048384) |
0.3 | 2.2 | GO:0070327 | thyroid hormone transport(GO:0070327) |
0.0 | 2.2 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0005776 | autophagosome(GO:0005776) |
0.1 | 2.4 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
0.0 | 2.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 1.5 | GO:0005581 | collagen trimer(GO:0005581) |
0.1 | 1.4 | GO:0070545 | PeBoW complex(GO:0070545) |
0.1 | 1.4 | GO:0008074 | guanylate cyclase complex, soluble(GO:0008074) |
0.0 | 1.4 | GO:0005865 | striated muscle thin filament(GO:0005865) |
0.1 | 1.3 | GO:0071564 | npBAF complex(GO:0071564) |
0.0 | 1.3 | GO:0035371 | microtubule plus-end(GO:0035371) |
0.4 | 1.2 | GO:0097629 | extrinsic component of omegasome membrane(GO:0097629) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.0 | GO:0051219 | phosphoprotein binding(GO:0051219) |
0.3 | 3.4 | GO:0016151 | nickel cation binding(GO:0016151) |
0.1 | 2.6 | GO:0003708 | retinoic acid receptor activity(GO:0003708) |
0.1 | 2.4 | GO:0042166 | acetylcholine binding(GO:0042166) |
0.2 | 2.2 | GO:0070324 | thyroid hormone binding(GO:0070324) |
0.1 | 2.1 | GO:0005537 | mannose binding(GO:0005537) |
0.0 | 2.1 | GO:0043130 | ubiquitin binding(GO:0043130) |
0.0 | 2.0 | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups(GO:0016765) |
0.0 | 2.0 | GO:0005088 | Ras guanyl-nucleotide exchange factor activity(GO:0005088) |
0.0 | 1.9 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.0 | 1.4 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 1.3 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
0.0 | 1.3 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 1.1 | WNT SIGNALING | Genes related to Wnt-mediated signal transduction |
0.0 | 1.0 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 0.9 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.8 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.0 | 0.7 | PID ERBB4 PATHWAY | ErbB4 signaling events |
0.0 | 0.6 | ST G ALPHA S PATHWAY | G alpha s Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.7 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
0.0 | 2.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.2 | 2.4 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.3 | 2.1 | REACTOME CREATION OF C4 AND C2 ACTIVATORS | Genes involved in Creation of C4 and C2 activators |
0.1 | 1.9 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 1.7 | REACTOME INWARDLY RECTIFYING K CHANNELS | Genes involved in Inwardly rectifying K+ channels |
0.1 | 1.3 | REACTOME REGULATION OF PYRUVATE DEHYDROGENASE PDH COMPLEX | Genes involved in Regulation of pyruvate dehydrogenase (PDH) complex |
0.1 | 1.3 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
0.0 | 1.1 | REACTOME REGULATION OF MRNA STABILITY BY PROTEINS THAT BIND AU RICH ELEMENTS | Genes involved in Regulation of mRNA Stability by Proteins that Bind AU-rich Elements |