avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Meis3 | mm10_v2_chr7_+_16175275_16175438 | -0.82 | 1.4e-09 | Click! |
Tgif1 | mm10_v2_chr17_-_70853482_70853546 | -0.67 | 8.7e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr7_-_97417730 Show fit | 14.01 |
ENSMUST00000043077.7
|
thyroid hormone responsive |
|
chr19_+_39287074 Show fit | 12.31 |
ENSMUST00000003137.8
|
cytochrome P450, family 2, subfamily c, polypeptide 29 |
|
chr11_-_5950018 Show fit | 9.31 |
ENSMUST00000102920.3
|
glucokinase |
|
chr2_+_155517948 Show fit | 8.59 |
ENSMUST00000029135.8
ENSMUST00000065973.2 ENSMUST00000103142.5 |
acyl-CoA synthetase short-chain family member 2 |
|
chr5_-_87337165 Show fit | 8.53 |
ENSMUST00000031195.2
|
UDP glucuronosyltransferase 2 family, polypeptide A3 |
|
chr7_-_30924169 Show fit | 8.06 |
ENSMUST00000074671.6
|
hepcidin antimicrobial peptide 2 |
|
chr8_+_105083753 Show fit | 7.39 |
ENSMUST00000093221.6
ENSMUST00000074403.6 |
carboxylesterase 3B |
|
chr15_-_76126538 Show fit | 7.16 |
ENSMUST00000054022.5
ENSMUST00000089654.3 |
cDNA sequence BC024139 |
|
chrX_+_10252361 Show fit | 7.06 |
ENSMUST00000115528.2
|
ornithine transcarbamylase |
|
chrX_+_10252305 Show fit | 6.74 |
ENSMUST00000049910.6
|
ornithine transcarbamylase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 18.2 | GO:0010866 | regulation of triglyceride biosynthetic process(GO:0010866) |
1.0 | 17.5 | GO:0052695 | cellular glucuronidation(GO:0052695) |
1.0 | 13.9 | GO:0015747 | urate transport(GO:0015747) |
4.6 | 13.8 | GO:0042450 | arginine biosynthetic process via ornithine(GO:0042450) |
2.5 | 12.6 | GO:0009732 | detection of carbohydrate stimulus(GO:0009730) detection of hexose stimulus(GO:0009732) detection of monosaccharide stimulus(GO:0034287) detection of glucose(GO:0051594) |
0.4 | 12.4 | GO:0019373 | epoxygenase P450 pathway(GO:0019373) |
0.8 | 11.9 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
1.9 | 11.6 | GO:1904075 | regulation of trophectodermal cell proliferation(GO:1904073) positive regulation of trophectodermal cell proliferation(GO:1904075) |
1.5 | 10.3 | GO:2000124 | regulation of endocannabinoid signaling pathway(GO:2000124) |
1.7 | 10.2 | GO:0051790 | short-chain fatty acid biosynthetic process(GO:0051790) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 32.4 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.1 | 30.2 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
0.0 | 19.3 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
1.3 | 14.1 | GO:0005579 | membrane attack complex(GO:0005579) |
0.1 | 12.7 | GO:0005765 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.8 | 12.0 | GO:0045180 | basal cortex(GO:0045180) |
1.3 | 11.6 | GO:0042567 | alphav-beta3 integrin-IGF-1-IGF1R complex(GO:0035867) insulin-like growth factor ternary complex(GO:0042567) |
0.3 | 11.6 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.4 | 9.8 | GO:0043196 | varicosity(GO:0043196) |
0.0 | 9.8 | GO:0005739 | mitochondrion(GO:0005739) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 27.2 | GO:0015020 | glucuronosyltransferase activity(GO:0015020) |
1.1 | 16.9 | GO:0015143 | urate transmembrane transporter activity(GO:0015143) salt transmembrane transporter activity(GO:1901702) |
3.5 | 13.8 | GO:0016743 | carboxyl- or carbamoyltransferase activity(GO:0016743) |
2.1 | 12.7 | GO:0034875 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.6 | 11.6 | GO:0015125 | bile acid transmembrane transporter activity(GO:0015125) |
0.1 | 10.5 | GO:0052689 | carboxylic ester hydrolase activity(GO:0052689) |
0.1 | 10.0 | GO:0008565 | protein transporter activity(GO:0008565) |
0.9 | 9.9 | GO:0004396 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) |
0.6 | 8.9 | GO:0047372 | acylglycerol lipase activity(GO:0047372) |
2.9 | 8.6 | GO:0003987 | acetate-CoA ligase activity(GO:0003987) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 20.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.3 | 16.9 | PID IGF1 PATHWAY | IGF1 pathway |
0.3 | 12.4 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.3 | 9.4 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.2 | 8.8 | PID FOXO PATHWAY | FoxO family signaling |
0.2 | 8.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.2 | 7.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.2 | 7.0 | ST PHOSPHOINOSITIDE 3 KINASE PATHWAY | PI3K Pathway |
0.1 | 6.6 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.1 | 6.3 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 27.7 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 21.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.5 | 17.9 | REACTOME COMPLEMENT CASCADE | Genes involved in Complement cascade |
0.4 | 14.6 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.6 | 10.0 | REACTOME TRYPTOPHAN CATABOLISM | Genes involved in Tryptophan catabolism |
0.3 | 9.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.4 | 9.0 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
0.1 | 8.7 | REACTOME RESPIRATORY ELECTRON TRANSPORT | Genes involved in Respiratory electron transport |
1.4 | 8.6 | REACTOME ETHANOL OXIDATION | Genes involved in Ethanol oxidation |
0.4 | 7.3 | REACTOME PROLACTIN RECEPTOR SIGNALING | Genes involved in Prolactin receptor signaling |