avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tlx1 | mm10_v2_chr19_+_45149833_45149878 | -0.25 | 1.4e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr6_-_55175019 Show fit | 10.19 |
ENSMUST00000003569.5
|
indolethylamine N-methyltransferase |
|
chr7_+_119526269 Show fit | 9.80 |
ENSMUST00000066465.1
|
acyl-CoA synthetase medium-chain family member 5 |
|
chr9_-_57683644 Show fit | 8.08 |
ENSMUST00000034860.3
|
cytochrome P450, family 1, subfamily a, polypeptide 2 |
|
chr7_-_97417730 Show fit | 7.04 |
ENSMUST00000043077.7
|
thyroid hormone responsive |
|
chr7_+_26835305 Show fit | 6.82 |
ENSMUST00000005685.8
|
cytochrome P450, family 2, subfamily a, polypeptide 5 |
|
chr10_-_40025253 Show fit | 4.63 |
ENSMUST00000163705.2
|
expressed sequence AI317395 |
|
chr10_-_81291227 Show fit | 4.39 |
ENSMUST00000045744.6
|
tight junction protein 3 |
|
chr5_+_146079254 Show fit | 3.95 |
ENSMUST00000035571.8
|
cytochrome P450, family 3, subfamily a, polypeptide 59 |
|
chr17_-_56121946 Show fit | 3.80 |
ENSMUST00000041357.7
|
leucine-rich alpha-2-glycoprotein 1 |
|
chr11_+_115462464 Show fit | 3.68 |
ENSMUST00000106532.3
ENSMUST00000092445.5 ENSMUST00000153466.1 |
solute carrier family 16 (monocarboxylic acid transporters), member 5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 12.2 | GO:1902998 | regulation of neuronal signal transduction(GO:1902847) positive regulation of neurofibrillary tangle assembly(GO:1902998) |
0.1 | 10.6 | GO:0035383 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
0.3 | 9.4 | GO:0035634 | response to stilbenoid(GO:0035634) |
0.0 | 8.2 | GO:0009308 | amine metabolic process(GO:0009308) |
2.7 | 8.1 | GO:0018894 | dibenzo-p-dioxin metabolic process(GO:0018894) |
0.2 | 7.0 | GO:0010866 | regulation of triglyceride biosynthetic process(GO:0010866) |
1.6 | 4.7 | GO:0090341 | negative regulation of secretion of lysosomal enzymes(GO:0090341) |
0.1 | 3.8 | GO:0030511 | positive regulation of transforming growth factor beta receptor signaling pathway(GO:0030511) positive regulation of cellular response to transforming growth factor beta stimulus(GO:1903846) |
0.5 | 3.4 | GO:2000124 | regulation of endocannabinoid signaling pathway(GO:2000124) |
0.2 | 3.4 | GO:2000353 | positive regulation of endothelial cell apoptotic process(GO:2000353) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 12.2 | GO:0097418 | neurofibrillary tangle(GO:0097418) |
0.0 | 10.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.1 | 9.4 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
0.0 | 5.5 | GO:0005791 | rough endoplasmic reticulum(GO:0005791) |
0.0 | 5.5 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 4.9 | GO:0005581 | collagen trimer(GO:0005581) |
0.2 | 3.2 | GO:0043203 | axon hillock(GO:0043203) |
0.9 | 2.6 | GO:0032311 | angiogenin-PRI complex(GO:0032311) |
0.1 | 2.6 | GO:0032281 | AMPA glutamate receptor complex(GO:0032281) |
0.1 | 2.4 | GO:0005719 | nuclear euchromatin(GO:0005719) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 12.2 | GO:0051787 | misfolded protein binding(GO:0051787) |
1.7 | 10.2 | GO:0008172 | S-methyltransferase activity(GO:0008172) |
1.4 | 9.8 | GO:0003996 | acyl-CoA ligase activity(GO:0003996) |
0.3 | 9.4 | GO:0008392 | arachidonic acid epoxygenase activity(GO:0008392) |
1.3 | 8.1 | GO:0034875 | oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor(GO:0033695) caffeine oxidase activity(GO:0034875) |
0.9 | 4.7 | GO:0032810 | sterol response element binding(GO:0032810) |
0.2 | 4.6 | GO:0001972 | retinoic acid binding(GO:0001972) |
1.3 | 3.9 | GO:0008390 | testosterone 16-alpha-hydroxylase activity(GO:0008390) |
0.1 | 3.8 | GO:0005160 | transforming growth factor beta receptor binding(GO:0005160) |
0.1 | 3.7 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.1 | 7.1 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 5.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 5.0 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 3.1 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 1.7 | PID TCR PATHWAY | TCR signaling in naïve CD4+ T cells |
0.3 | 1.6 | ST IL 13 PATHWAY | Interleukin 13 (IL-13) Pathway |
0.0 | 1.4 | PID P75 NTR PATHWAY | p75(NTR)-mediated signaling |
0.0 | 1.3 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.9 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
2.7 | 8.1 | REACTOME XENOBIOTICS | Genes involved in Xenobiotics |
0.1 | 5.0 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 3.8 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.1 | 3.5 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
0.1 | 3.1 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.1 | 3.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.2 | 2.6 | REACTOME CYTOSOLIC SULFONATION OF SMALL MOLECULES | Genes involved in Cytosolic sulfonation of small molecules |
0.1 | 2.4 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.2 | 2.2 | REACTOME ENDOGENOUS STEROLS | Genes involved in Endogenous sterols |