avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Twist1 | mm10_v2_chr12_+_33957645_33957671 | -0.28 | 9.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr17_+_36942910 Show fit | 16.51 |
ENSMUST00000040498.5
|
ring finger protein 39 |
|
chr17_+_36943025 Show fit | 11.98 |
ENSMUST00000173072.1
|
ring finger protein 39 |
|
chr6_-_41035501 Show fit | 10.82 |
ENSMUST00000031931.5
|
RIKEN cDNA 2210010C04 gene |
|
chr6_+_30639218 Show fit | 10.07 |
ENSMUST00000031806.9
|
carboxypeptidase A1, pancreatic |
|
chr8_-_105933832 Show fit | 9.70 |
ENSMUST00000034368.6
|
chymotrypsin-like |
|
chr19_+_39007019 Show fit | 9.68 |
ENSMUST00000025966.4
|
cytochrome P450, family 2, subfamily c, polypeptide 55 |
|
chr11_-_113710017 Show fit | 7.47 |
ENSMUST00000018871.1
|
cleavage and polyadenylation specific factor 4-like |
|
chr2_+_31887262 Show fit | 6.83 |
ENSMUST00000138325.1
ENSMUST00000028187.6 |
laminin gamma 3 |
|
chr7_+_44384803 Show fit | 6.45 |
ENSMUST00000120262.1
|
synaptotagmin III |
|
chr11_-_113709520 Show fit | 6.29 |
ENSMUST00000173655.1
ENSMUST00000100248.4 |
cleavage and polyadenylation specific factor 4-like |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 22.5 | GO:0006508 | proteolysis(GO:0006508) |
1.1 | 13.8 | GO:0098789 | pre-mRNA cleavage required for polyadenylation(GO:0098789) |
0.9 | 9.7 | GO:0043651 | linoleic acid metabolic process(GO:0043651) |
0.2 | 6.8 | GO:0014002 | astrocyte development(GO:0014002) |
0.3 | 6.4 | GO:0031340 | positive regulation of vesicle fusion(GO:0031340) |
1.9 | 5.6 | GO:0033861 | negative regulation of NAD(P)H oxidase activity(GO:0033861) neuron projection maintenance(GO:1990535) |
0.8 | 5.3 | GO:1904222 | regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity(GO:1904217) positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity(GO:1904219) positive regulation of serine C-palmitoyltransferase activity(GO:1904222) |
1.0 | 5.2 | GO:0002669 | positive regulation of T cell anergy(GO:0002669) positive regulation of lymphocyte anergy(GO:0002913) |
0.7 | 4.2 | GO:1902897 | regulation of postsynaptic density protein 95 clustering(GO:1902897) |
0.4 | 4.1 | GO:0051596 | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 32.8 | GO:0005615 | extracellular space(GO:0005615) |
0.6 | 13.8 | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex(GO:0005847) |
0.2 | 5.6 | GO:0005732 | small nucleolar ribonucleoprotein complex(GO:0005732) |
0.6 | 5.2 | GO:0042105 | alpha-beta T cell receptor complex(GO:0042105) |
0.3 | 4.2 | GO:0016342 | catenin complex(GO:0016342) |
0.0 | 4.2 | GO:0005604 | basement membrane(GO:0005604) |
0.0 | 4.1 | GO:0031965 | nuclear membrane(GO:0031965) |
0.6 | 3.6 | GO:0030062 | mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
0.2 | 3.4 | GO:0032279 | asymmetric synapse(GO:0032279) |
0.0 | 3.2 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 25.3 | GO:0008236 | serine-type peptidase activity(GO:0008236) |
0.2 | 13.8 | GO:0004521 | endoribonuclease activity(GO:0004521) |
0.3 | 10.2 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
2.4 | 9.7 | GO:0071614 | linoleic acid epoxygenase activity(GO:0071614) |
0.1 | 6.4 | GO:0001786 | phosphatidylserine binding(GO:0001786) |
0.0 | 5.7 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.1 | 5.6 | GO:0005159 | insulin-like growth factor receptor binding(GO:0005159) |
0.4 | 5.3 | GO:0015194 | L-serine transmembrane transporter activity(GO:0015194) serine transmembrane transporter activity(GO:0022889) |
0.3 | 4.2 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.5 | 4.1 | GO:0004416 | hydroxyacylglutathione hydrolase activity(GO:0004416) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.3 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 6.5 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.1 | 5.3 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 4.5 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 4.4 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.0 | 4.3 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 4.1 | PID P73PATHWAY | p73 transcription factor network |
0.0 | 1.9 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 1.8 | PID ALK2 PATHWAY | ALK2 signaling events |
0.0 | 1.2 | PID NECTIN PATHWAY | Nectin adhesion pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.2 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.1 | 4.2 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.2 | 3.6 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.3 | 3.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
0.0 | 2.9 | REACTOME PHASE II CONJUGATION | Genes involved in Phase II conjugation |
0.1 | 2.8 | REACTOME AMINE LIGAND BINDING RECEPTORS | Genes involved in Amine ligand-binding receptors |
0.2 | 2.6 | REACTOME FACILITATIVE NA INDEPENDENT GLUCOSE TRANSPORTERS | Genes involved in Facilitative Na+-independent glucose transporters |
0.2 | 2.2 | REACTOME GAMMA CARBOXYLATION TRANSPORT AND AMINO TERMINAL CLEAVAGE OF PROTEINS | Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins |
0.1 | 2.2 | REACTOME EXTENSION OF TELOMERES | Genes involved in Extension of Telomeres |
0.0 | 1.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |