avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Wrnip1 | mm10_v2_chr13_+_32802007_32802152 | -0.65 | 1.7e-05 | Click! |
Rcor1 | mm10_v2_chr12_+_111039334_111039400 | -0.42 | 1.0e-02 | Click! |
Mta3 | mm10_v2_chr17_+_83706137_83706169 | 0.41 | 1.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr9_+_111019284 Show fit | 19.68 |
ENSMUST00000035077.3
|
lactotransferrin |
|
chr7_-_142657466 Show fit | 17.20 |
ENSMUST00000097936.2
ENSMUST00000000033.5 |
insulin-like growth factor 2 |
|
chr11_+_87793722 Show fit | 16.57 |
ENSMUST00000143021.2
|
myeloperoxidase |
|
chr7_+_117380937 Show fit | 12.85 |
ENSMUST00000032892.5
|
xylosyltransferase 1 |
|
chr7_-_142576492 Show fit | 12.84 |
ENSMUST00000140716.1
|
H19 fetal liver mRNA |
|
chr7_-_45333754 Show fit | 12.80 |
ENSMUST00000042194.8
|
transient receptor potential cation channel, subfamily M, member 4 |
|
chr8_+_22974844 Show fit | 12.60 |
ENSMUST00000110688.2
ENSMUST00000121802.2 |
ankyrin 1, erythroid |
|
chr11_+_87794206 Show fit | 12.14 |
ENSMUST00000121303.1
|
myeloperoxidase |
|
chr11_+_87793470 Show fit | 11.99 |
ENSMUST00000020779.4
|
myeloperoxidase |
|
chr2_+_84988194 Show fit | 11.82 |
ENSMUST00000028466.5
|
proteoglycan 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.6 | 45.0 | GO:0038028 | insulin receptor signaling pathway via phosphatidylinositol 3-kinase(GO:0038028) |
2.3 | 40.9 | GO:0015816 | glycine transport(GO:0015816) |
13.6 | 40.7 | GO:0002148 | hypochlorous acid metabolic process(GO:0002148) hypochlorous acid biosynthetic process(GO:0002149) |
0.9 | 39.6 | GO:0051693 | actin filament capping(GO:0051693) |
2.2 | 35.6 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
0.9 | 34.2 | GO:0006910 | phagocytosis, recognition(GO:0006910) |
0.5 | 31.9 | GO:0007218 | neuropeptide signaling pathway(GO:0007218) |
2.3 | 30.2 | GO:2000653 | regulation of genetic imprinting(GO:2000653) |
0.7 | 29.8 | GO:0050853 | B cell receptor signaling pathway(GO:0050853) |
0.9 | 29.6 | GO:0048821 | erythrocyte development(GO:0048821) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 275.3 | GO:0005615 | extracellular space(GO:0005615) |
0.1 | 120.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.3 | 75.7 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.7 | 56.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.4 | 45.9 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.3 | 42.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.8 | 40.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
2.5 | 39.2 | GO:0005766 | primary lysosome(GO:0005766) azurophil granule(GO:0042582) |
2.1 | 35.3 | GO:0001527 | microfibril(GO:0001527) fibril(GO:0043205) |
1.3 | 32.8 | GO:0005859 | muscle myosin complex(GO:0005859) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 78.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
1.9 | 70.3 | GO:0043539 | protein serine/threonine kinase activator activity(GO:0043539) |
0.4 | 64.8 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
2.3 | 49.5 | GO:0070742 | C2H2 zinc finger domain binding(GO:0070742) |
0.2 | 42.7 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.9 | 40.0 | GO:0005158 | insulin receptor binding(GO:0005158) |
0.7 | 37.0 | GO:0004601 | peroxidase activity(GO:0004601) |
0.6 | 37.0 | GO:0070888 | E-box binding(GO:0070888) |
0.1 | 36.9 | GO:0005509 | calcium ion binding(GO:0005509) |
2.5 | 34.3 | GO:0015187 | glycine transmembrane transporter activity(GO:0015187) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 141.4 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.5 | 106.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.8 | 103.5 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.3 | 76.1 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.4 | 72.7 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
1.3 | 55.1 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.8 | 44.3 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.9 | 42.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.7 | 36.4 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
0.7 | 31.3 | PID ATR PATHWAY | ATR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 103.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
1.3 | 68.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.4 | 57.3 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
1.2 | 54.5 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
2.5 | 53.4 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
0.5 | 49.8 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
1.1 | 48.0 | REACTOME INHIBITION OF INSULIN SECRETION BY ADRENALINE NORADRENALINE | Genes involved in Inhibition of Insulin Secretion by Adrenaline/Noradrenaline |
1.5 | 40.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
0.5 | 38.0 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
2.5 | 37.3 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |