avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Zbtb33 | mm10_v2_chrX_+_38189780_38189826 | 0.71 | 1.4e-06 | Click! |
Chd2 | mm10_v2_chr7_-_73541738_73541758 | 0.56 | 3.5e-04 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 14.1 | GO:0010923 | negative regulation of phosphatase activity(GO:0010923) |
0.4 | 11.7 | GO:0000413 | protein peptidyl-prolyl isomerization(GO:0000413) |
2.3 | 11.6 | GO:0033140 | negative regulation of peptidyl-serine phosphorylation of STAT protein(GO:0033140) |
0.1 | 11.2 | GO:0006457 | protein folding(GO:0006457) |
0.1 | 11.1 | GO:0051291 | protein heterooligomerization(GO:0051291) |
0.1 | 10.7 | GO:0006334 | nucleosome assembly(GO:0006334) |
0.8 | 10.6 | GO:0034501 | protein localization to kinetochore(GO:0034501) |
0.9 | 9.7 | GO:2000051 | negative regulation of non-canonical Wnt signaling pathway(GO:2000051) |
1.4 | 9.6 | GO:0031508 | pericentric heterochromatin assembly(GO:0031508) |
1.2 | 9.3 | GO:0010032 | meiotic chromosome condensation(GO:0010032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 20.8 | GO:0000796 | condensin complex(GO:0000796) |
0.0 | 17.0 | GO:0005730 | nucleolus(GO:0005730) |
1.0 | 13.4 | GO:0000940 | condensed chromosome outer kinetochore(GO:0000940) |
0.0 | 12.3 | GO:0005815 | microtubule organizing center(GO:0005815) |
0.3 | 9.6 | GO:0005721 | pericentric heterochromatin(GO:0005721) |
0.3 | 8.4 | GO:0005685 | U1 snRNP(GO:0005685) |
0.3 | 8.4 | GO:0034451 | centriolar satellite(GO:0034451) |
0.1 | 8.4 | GO:0044815 | DNA packaging complex(GO:0044815) |
0.0 | 6.6 | GO:0030426 | growth cone(GO:0030426) |
0.7 | 5.7 | GO:0000836 | ER ubiquitin ligase complex(GO:0000835) Hrd1p ubiquitin ligase complex(GO:0000836) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 21.6 | GO:0004386 | helicase activity(GO:0004386) |
0.1 | 15.1 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.4 | 14.1 | GO:0001671 | ATPase activator activity(GO:0001671) |
0.3 | 11.7 | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity(GO:0003755) |
0.0 | 11.5 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.0 | 11.4 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.5 | 10.0 | GO:0034236 | protein kinase A catalytic subunit binding(GO:0034236) |
2.0 | 9.9 | GO:0043515 | kinetochore binding(GO:0043515) |
0.1 | 8.8 | GO:0101005 | thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.2 | 8.5 | GO:0043014 | alpha-tubulin binding(GO:0043014) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 28.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.3 | 18.5 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.1 | 10.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.2 | 10.3 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 5.9 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 3.1 | PID FANCONI PATHWAY | Fanconi anemia pathway |
0.0 | 3.1 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 2.9 | PID AURORA A PATHWAY | Aurora A signaling |
0.2 | 2.8 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 2.6 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 9.6 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.1 | 9.5 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
1.0 | 9.0 | REACTOME IRAK2 MEDIATED ACTIVATION OF TAK1 COMPLEX UPON TLR7 8 OR 9 STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
0.2 | 6.1 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.2 | 5.7 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 5.7 | REACTOME DEPOSITION OF NEW CENPA CONTAINING NUCLEOSOMES AT THE CENTROMERE | Genes involved in Deposition of New CENPA-containing Nucleosomes at the Centromere |
0.1 | 5.3 | REACTOME CIRCADIAN CLOCK | Genes involved in Circadian Clock |
0.1 | 4.6 | REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM | Genes involved in Transport of Mature Transcript to Cytoplasm |
0.2 | 3.7 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |