avrg: GSE58827: Dynamics of the Mouse Liver
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Zfp740 | mm10_v2_chr15_+_102203639_102203709 | -0.55 | 4.6e-04 | Click! |
Zfp219 | mm10_v2_chr14_-_52020698_52020737 | -0.44 | 6.8e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_44173271 Show fit | 6.10 |
ENSMUST00000088356.4
ENSMUST00000169582.1 |
predicted gene 608 |
|
chr16_+_44173239 Show fit | 5.18 |
ENSMUST00000119746.1
|
predicted gene 608 |
|
chr2_-_148045891 Show fit | 3.98 |
ENSMUST00000109964.1
|
forkhead box A2 |
|
chr3_-_89393629 Show fit | 3.73 |
ENSMUST00000124783.1
ENSMUST00000126027.1 |
zinc finger and BTB domain containing 7B |
|
chr4_-_114908892 Show fit | 3.22 |
ENSMUST00000068654.3
|
forkhead box D2 |
|
chr6_-_72235559 Show fit | 3.18 |
ENSMUST00000042646.7
|
atonal homolog 8 (Drosophila) |
|
chr11_-_69369377 Show fit | 3.10 |
ENSMUST00000092971.6
ENSMUST00000108661.1 |
chromodomain helicase DNA binding protein 3 |
|
chr13_-_29984219 Show fit | 3.03 |
ENSMUST00000146092.1
|
E2F transcription factor 3 |
|
chrX_-_38564519 Show fit | 2.98 |
ENSMUST00000016681.8
|
cullin 4B |
|
chr3_-_89393294 Show fit | 2.65 |
ENSMUST00000142119.1
ENSMUST00000029677.8 ENSMUST00000148361.1 |
zinc finger and BTB domain containing 7B |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 6.4 | GO:0043376 | regulation of CD8-positive, alpha-beta T cell differentiation(GO:0043376) |
1.3 | 4.0 | GO:0045014 | carbon catabolite repression of transcription(GO:0045013) negative regulation of transcription by glucose(GO:0045014) |
0.1 | 3.3 | GO:0045603 | positive regulation of endothelial cell differentiation(GO:0045603) |
0.2 | 3.2 | GO:0070914 | UV-damage excision repair(GO:0070914) |
0.3 | 3.0 | GO:0070345 | negative regulation of fat cell proliferation(GO:0070345) |
0.7 | 2.7 | GO:0015744 | succinate transport(GO:0015744) |
0.2 | 2.6 | GO:2000576 | positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582) |
0.5 | 2.5 | GO:0032915 | positive regulation of transforming growth factor beta2 production(GO:0032915) |
0.0 | 2.5 | GO:0007051 | spindle organization(GO:0007051) |
0.0 | 2.4 | GO:0070936 | protein K48-linked ubiquitination(GO:0070936) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 4.3 | GO:0005741 | mitochondrial outer membrane(GO:0005741) |
0.2 | 4.1 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.4 | 3.0 | GO:0031465 | Cul4B-RING E3 ubiquitin ligase complex(GO:0031465) |
0.2 | 2.7 | GO:0016461 | unconventional myosin complex(GO:0016461) |
0.0 | 2.7 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
0.0 | 2.7 | GO:0098852 | lysosomal membrane(GO:0005765) lytic vacuole membrane(GO:0098852) |
0.1 | 2.3 | GO:0000124 | SAGA complex(GO:0000124) |
0.1 | 1.8 | GO:0000407 | pre-autophagosomal structure(GO:0000407) |
0.2 | 1.7 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.9 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.1 | 3.2 | GO:0001205 | transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001205) |
0.0 | 3.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
0.2 | 3.0 | GO:0070888 | E-box binding(GO:0070888) |
0.3 | 2.8 | GO:0008140 | cAMP response element binding protein binding(GO:0008140) |
0.9 | 2.7 | GO:0017153 | sodium:dicarboxylate symporter activity(GO:0017153) |
0.7 | 2.7 | GO:0008802 | betaine-aldehyde dehydrogenase activity(GO:0008802) |
0.0 | 2.7 | GO:0101005 | thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005) |
0.1 | 2.6 | GO:0004675 | transmembrane receptor protein serine/threonine kinase activity(GO:0004675) |
0.1 | 2.6 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.2 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 4.2 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 3.6 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 3.0 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 2.2 | PID TCR CALCIUM PATHWAY | Calcium signaling in the CD4+ TCR pathway |
0.0 | 2.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.0 | 2.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 1.8 | PID ALK1 PATHWAY | ALK1 signaling events |
0.1 | 1.8 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.1 | 1.7 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.5 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.3 | 4.1 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.1 | 3.7 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
0.0 | 3.3 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.2 | 2.9 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.2 | 2.7 | REACTOME BILE SALT AND ORGANIC ANION SLC TRANSPORTERS | Genes involved in Bile salt and organic anion SLC transporters |
0.1 | 2.7 | REACTOME LIPOPROTEIN METABOLISM | Genes involved in Lipoprotein metabolism |
0.1 | 2.3 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.0 | 2.3 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 2.2 | REACTOME SYNTHESIS OF PE | Genes involved in Synthesis of PE |