hg38_v1_chr1_+_84181630_84181667	0.31228	BRCA1	ENST00000610457.1|PRKACB|ENSG00000142875.19|protein kinase cAMP-activated catalytic subunit beta
hg38_v1_chr8_-_80171106_80171200	0.289508	BRCA1	ENST00000519303.6|TPD52|ENSG00000076554.16|tumor protein D52
hg38_v1_chr2_+_108378176_108378193	0.257898	BRCA1	ENST00000409309.3|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr2_+_108377947_108377977	0.24096	BRCA1	ENST00000272452.7|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr18_+_44697118_44697165	0.234718	BRCA1	ENST00000677077.1|SETBP1|ENSG00000152217.20|SET binding protein 1
hg38_v1_chr17_-_43661915_43661929	0.21032	BRCA1	ENST00000318579.9|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1	ENST00000393661.2|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1
hg38_v1_chr7_+_100119607_100119698	0.183841	BRCA1	ENST00000262932.5|CNPY4|ENSG00000166997.8|canopy FGF signaling regulator 4
hg38_v1_chr1_-_160262501_160262514	0.145953	BRCA1	ENST00000447377.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr1_-_160262522_160262533	0.145901	BRCA1	ENST00000440682.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr11_+_73308237_73308317	0.124073	BRCA1	ENST00000263674.4|ARHGEF17|ENSG00000110237.5|Rho guanine nucleotide exchange factor 17
hg38_v1_chr13_-_51974775_51974775	0.122933	BRCA1	ENST00000674147.1|ATP7B|ENSG00000123191.16|ATPase copper transporting beta
hg38_v1_chr2_+_203014721_203014770	0.100815	BRCA1	ENST00000683091.1|NBEAL1|ENSG00000144426.19|neurobeachin like 1
hg38_v1_chr2_+_203014842_203014888	0.09203	BRCA1	ENST00000683969.1|NBEAL1|ENSG00000144426.19|neurobeachin like 1	ENST00000449802.5|NBEAL1|ENSG00000144426.19|neurobeachin like 1
hg38_v1_chr4_-_48780242_48780318	0.0890668	BRCA1	ENST00000507711.5|FRYL|ENSG00000075539.15|FRY like transcription coactivator	ENST00000358350.9|FRYL|ENSG00000075539.15|FRY like transcription coactivator
hg38_v1_chr11_+_33258304_33258384	0.0865154	BRCA1	ENST00000531504.5|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3	ENST00000456517.2|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3
hg38_v1_chr14_+_22040576_22040601	0.0843778	BRCA1	ENST00000390448.3|TRAV20|ENSG00000211800.3|T cell receptor alpha variable 20
hg38_v1_chr20_+_58907981_58908019	0.0833673	BRCA1	ENST00000656419.1|GNAS|ENSG00000087460.29|GNAS complex locus
hg38_v1_chr19_+_45467988_45468007	0.0803517	BRCA1	ENST00000615753.4|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000585836.5|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000417353.6|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000591858.5|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000443841.6|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000590335.1|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000353609.8|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit
hg38_v1_chr12_-_95116967_95116977	0.0778547	BRCA1	ENST00000551521.5|FGD6|ENSG00000180263.14|FYVE, RhoGEF and PH domain containing 6
hg38_v1_chr10_+_47322450_47322459	0.075877	BRCA1	ENST00000581492.3|GDF2|ENSG00000263761.3|growth differentiation factor 2
hg38_v1_chrX_+_10156960_10156992	0.0725059	BRCA1	ENST00000380833.9|CLCN4|ENSG00000073464.13|chloride voltage-gated channel 4
hg38_v1_chrX_-_10833643_10833664	0.0716814	BRCA1	ENST00000380785.5|MID1|ENSG00000101871.16|midline 1	ENST00000380787.5|MID1|ENSG00000101871.16|midline 1
hg38_v1_chr20_+_33161768_33161782	0.0702787	BRCA1	ENST00000253362.6|BPIFA2|ENSG00000131050.11|BPI fold containing family A member 2
hg38_v1_chr12_-_122395422_122395436	0.0648516	BRCA1	ENST00000540304.6|CLIP1|ENSG00000130779.22|CAP-Gly domain containing linker protein 1
hg38_v1_chr10_-_73625951_73626016	0.063561	BRCA1	ENST00000433394.1|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54	ENST00000422491.7|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54
hg38_v1_chr19_+_48469354_48469433	0.0623292	BRCA1	ENST00000452733.7|CYTH2|ENSG00000105443.15|cytohesin 2	ENST00000641098.1|CYTH2|ENSG00000105443.15|cytohesin 2
hg38_v1_chrX_-_71068384_71068448	0.0620643	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.12|sorting nexin 12	ENST00000622259.4|SNX12|ENSG00000147164.12|sorting nexin 12
hg38_v1_chr14_+_102592611_102592668	0.0554433	BRCA1	ENST00000262241.7|RCOR1|ENSG00000089902.10|REST corepressor 1
hg38_v1_chr19_-_12801787_12801807	0.0497495	BRCA1	ENST00000334482.9|PRDX2|ENSG00000167815.12|peroxiredoxin 2	ENST00000301522.3|PRDX2|ENSG00000167815.12|peroxiredoxin 2
hg38_v1_chr2_-_151261839_151261870	0.0464179	BRCA1	ENST00000331426.6|RBM43|ENSG00000184898.7|RNA binding motif protein 43
hg38_v1_chr11_-_72112750_72112780	0.046373	BRCA1	ENST00000545680.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000543587.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000538393.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535234.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000227618.8|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535503.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15
hg38_v1_chr14_+_63761836_63761899	0.04236	BRCA1	ENST00000674003.1|SYNE2|ENSG00000054654.19|spectrin repeat containing nuclear envelope protein 2
hg38_v1_chr8_-_17002327_17002351	0.0422337	BRCA1	ENST00000180166.6|FGF20|ENSG00000078579.9|fibroblast growth factor 20
hg38_v1_chr8_+_22165140_22165218	0.0415662	BRCA1	ENST00000397814.7|BMP1|ENSG00000168487.20|bone morphogenetic protein 1	ENST00000354870.5|BMP1|ENSG00000168487.20|bone morphogenetic protein 1
hg38_v1_chr14_-_94476211_94476229	0.0406872	BRCA1	ENST00000298845.12|SERPINA9|ENSG00000170054.16|serpin family A member 9
hg38_v1_chr13_+_29428709_29428726	0.0377026	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.22|microtubule associated scaffold protein 2
hg38_v1_chr1_-_160262407_160262494	0.0376218	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000610139.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000475733.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000407642.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000368073.7|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8	ENST00000326837.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr14_-_94476190_94476203	0.0362328	BRCA1	ENST00000674397.2|SERPINA9|ENSG00000170054.16|serpin family A member 9	ENST00000448305.6|SERPINA9|ENSG00000170054.16|serpin family A member 9
hg38_v1_chr11_+_118077009_118077038	0.0324109	BRCA1	ENST00000616579.4|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4	ENST00000534111.5|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4
hg38_v1_chr12_-_80937918_80937954	0.0310248	BRCA1	ENST00000552864.6|LIN7A|ENSG00000111052.8|lin-7 homolog A, crumbs cell polarity complex component
hg38_v1_chr1_-_160262540_160262565	0.0301447	BRCA1	ENST00000368074.6|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr6_-_158999748_158999839	0.0293602	BRCA1	ENST00000449822.5|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr1_-_17045219_17045261	0.0283123	BRCA1	ENST00000491274.5|SDHB|ENSG00000117118.10|succinate dehydrogenase complex iron sulfur subunit B
hg38_v1_chr7_-_100119323_100119372	0.028164	BRCA1	ENST00000523306.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000344095.8|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000417349.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000493322.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000520135.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000460673.2|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000453269.7|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452041.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000452438.6|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6	ENST00000451699.5|TAF6|ENSG00000106290.15|TATA-box binding protein associated factor 6
hg38_v1_chr10_-_49269_49296	0.027657	BRCA1	ENST00000562809.1|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000568866.5|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000561967.1|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII	ENST00000568584.6|TUBB8|ENSG00000261456.6|tubulin beta 8 class VIII
hg38_v1_chr2_+_135741814_135741904	0.0273415	BRCA1	ENST00000272638.14|UBXN4|ENSG00000144224.17|UBX domain protein 4
hg38_v1_chr9_-_21031614_21031653	0.027225	BRCA1	ENST00000495827.3|HACD4|ENSG00000188921.14|3-hydroxyacyl-CoA dehydratase 4
hg38_v1_chr2_-_49973939_49974014	0.0270439	BRCA1	ENST00000630656.1|NRXN1|ENSG00000179915.24|neurexin 1
hg38_v1_chr5_+_154941063_154941114	0.0269712	BRCA1	ENST00000523037.6|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000265229.12|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000439747.7|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22	ENST00000522038.5|MRPL22|ENSG00000082515.18|mitochondrial ribosomal protein L22
hg38_v1_chr1_+_161766282_161766303	0.0267467	BRCA1	ENST00000680688.1|ATF6|ENSG00000118217.7|activating transcription factor 6
hg38_v1_chr2_-_157325808_157325905	0.0246307	BRCA1	ENST00000410096.6|ERMN|ENSG00000136541.15|ermin	ENST00000420719.6|ERMN|ENSG00000136541.15|ermin	ENST00000409216.5|ERMN|ENSG00000136541.15|ermin	ENST00000419116.2|ERMN|ENSG00000136541.15|ermin
hg38_v1_chr4_+_625555_625617	0.0217666	BRCA1	ENST00000496514.6|PDE6B|ENSG00000133256.13|phosphodiesterase 6B	ENST00000255622.10|PDE6B|ENSG00000133256.13|phosphodiesterase 6B
hg38_v1_chr9_-_92424427_92424480	0.0214401	BRCA1	ENST00000375550.5|OMD|ENSG00000127083.8|osteomodulin
hg38_v1_chr3_+_184338826_184338854	0.0212809	BRCA1	ENST00000453072.5|FAM131A|ENSG00000175182.15|family with sequence similarity 131 member A
hg38_v1_chr11_+_118077067_118077130	0.0212298	BRCA1	ENST00000522307.5|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4	ENST00000523251.5|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4	ENST00000437212.8|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4	ENST00000522824.5|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4	ENST00000522151.5|TMPRSS4|ENSG00000137648.19|transmembrane serine protease 4
hg38_v1_chr11_-_61430008_61430031	0.020106	BRCA1	ENST00000394888.8|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr19_+_46347063_46347108	0.0185732	BRCA1	ENST00000012443.9|PPP5C|ENSG00000011485.15|protein phosphatase 5 catalytic subunit	ENST00000391919.1|PPP5C|ENSG00000011485.15|protein phosphatase 5 catalytic subunit
hg38_v1_chr14_+_20190896_20190896	0.0158341	BRCA1	ENST00000641879.2|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2	ENST00000641682.1|OR11G2|ENSG00000196832.5|olfactory receptor family 11 subfamily G member 2
hg38_v1_chr8_+_22165358_22165408	0.0144849	BRCA1	ENST00000306349.13|BMP1|ENSG00000168487.20|bone morphogenetic protein 1	ENST00000306385.10|BMP1|ENSG00000168487.20|bone morphogenetic protein 1
hg38_v1_chr5_+_146203544_146203587	0.0142542	BRCA1	ENST00000506502.2|ENSG00000275740.1|ENSG00000275740.1|novel readthrough transcript
hg38_v1_chr16_-_740980_741021	0.0141255	BRCA1	ENST00000251588.7|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr16_-_740934_740978	0.0136285	BRCA1	ENST00000540986.5|CIAO3|ENSG00000103245.14|cytosolic iron-sulfur assembly component 3
hg38_v1_chr6_-_43014254_43014293	0.0132502	BRCA1	ENST00000642748.1|MEA1|ENSG00000124733.5|male-enhanced antigen 1
hg38_v1_chr20_-_35438218_35438266	0.012127	BRCA1	ENST00000374369.8|GDF5|ENSG00000125965.9|growth differentiation factor 5
hg38_v1_chrX_-_71068311_71068383	0.0116	BRCA1	ENST00000374274.8|SNX12|ENSG00000147164.12|sorting nexin 12
hg38_v1_chr6_-_170553216_170553334	0.0108494	BRCA1	ENST00000262193.7|PSMB1|ENSG00000008018.9|proteasome 20S subunit beta 1
hg38_v1_chr12_-_95942592_95942635	0.0107913	BRCA1	ENST00000546947.5|CCDC38|ENSG00000165972.13|coiled-coil domain containing 38	ENST00000344280.8|CCDC38|ENSG00000165972.13|coiled-coil domain containing 38	ENST00000546386.1|CCDC38|ENSG00000165972.13|coiled-coil domain containing 38
hg38_v1_chr2_-_144517663_144518026	0.0105585	BRCA1	ENST00000427902.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000462355.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000470879.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000409487.7|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000435831.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000630572.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2
hg38_v1_chr11_+_101914997_101915036	0.00988084	BRCA1	ENST00000263468.13|CEP126|ENSG00000110318.15|centrosomal protein 126
hg38_v1_chr1_+_160177386_160177411	0.00970058	BRCA1	ENST00000470705.1|ATP1A4|ENSG00000132681.17|ATPase Na+/K+ transporting subunit alpha 4
hg38_v1_chr19_+_55675191_55675289	0.00928354	BRCA1	ENST00000270460.11|EPN1|ENSG00000063245.15|epsin 1	ENST00000085079.11|EPN1|ENSG00000063245.15|epsin 1
hg38_v1_chr19_-_37172670_37172741	0.00883795	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000292841.10|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000356958.8|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr2_+_98087160_98087175	0.00864029	BRCA1	ENST00000477737.6|VWA3B|ENSG00000168658.19|von Willebrand factor A domain containing 3B
hg38_v1_chr12_-_24562438_24562498	0.00733426	BRCA1	ENST00000646273.1|SOX5|ENSG00000134532.19|SRY-box transcription factor 5	ENST00000659413.1|SOX5|ENSG00000134532.19|SRY-box transcription factor 5	ENST00000446891.7|SOX5|ENSG00000134532.19|SRY-box transcription factor 5
hg38_v1_chrX_-_77895414_77895467	0.00723559	BRCA1	ENST00000618282.5|MAGT1|ENSG00000102158.21|magnesium transporter 1	ENST00000373336.3|MAGT1|ENSG00000102158.21|magnesium transporter 1
hg38_v1_chr11_-_61429934_61429992	0.00631024	BRCA1	ENST00000541963.5|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7	ENST00000477890.6|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7	ENST00000439958.8|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr6_+_33204645_33204700	0.00524215	BRCA1	ENST00000374662.4|HSD17B8|ENSG00000204228.4|hydroxysteroid 17-beta dehydrogenase 8
hg38_v1_chr12_-_116881062_116881117	0.00488029	BRCA1	ENST00000550505.5|HRK|ENSG00000135116.9|harakiri, BCL2 interacting protein
hg38_v1_chrX_-_77895546_77895593	0.00407978	BRCA1	ENST00000358075.11|MAGT1|ENSG00000102158.21|magnesium transporter 1
hg38_v1_chr17_+_38752731_38752799	0.00316437	BRCA1	ENST00000619426.5|PSMB3|ENSG00000277791.5|proteasome 20S subunit beta 3	ENST00000610434.4|PSMB3|ENSG00000277791.5|proteasome 20S subunit beta 3
hg38_v1_chr14_-_59630806_59630820	0.00135102	BRCA1	ENST00000342503.8|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr1_-_41242106_41242151	0.00102201	BRCA1	ENST00000337495.9|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372597.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1	ENST00000372596.5|SCMH1|ENSG00000010803.16|Scm polycomb group protein homolog 1
hg38_v1_chr10_+_91923762_91923837	0.000834146	BRCA1	ENST00000265990.11|BTAF1|ENSG00000095564.14|B-TFIID TATA-box binding protein associated factor 1
hg38_v1_chr13_+_27251545_27251566	0.000628818	BRCA1	ENST00000311549.11|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr4_+_109827963_109827981	0.000422454	BRCA1	ENST00000317735.7|RRH|ENSG00000180245.7|retinal pigment epithelium-derived rhodopsin homolog
hg38_v1_chr6_+_16129077_16129171	0.000346283	BRCA1	ENST00000356840.8|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein	ENST00000349606.4|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein
