Illumina Body Map 2 (GSE30611)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Motif name | Z-value | Associated genes | Profile | Logo |
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HNF1A_HNF1B | 8.65 |
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RFX3_RFX2 | 7.14 |
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SPIB | 5.65 |
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MEF2D_MEF2A | 5.45 |
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RFX7_RFX4_RFX1 | 5.38 |
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TEAD3_TEAD1 | 5.35 |
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MEF2C | 4.99 |
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POU5F1_POU2F3 | 4.92 |
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SPI1 | 4.92 |
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IRF2_STAT2_IRF8_IRF1 | 4.47 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.