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Illumina Body Map 2 (GSE30611)
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Results for AAUACUG
Z-value: 0.85
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miRNA associated with seed AAUACUG
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr10_+_100347225 Show fit | 2.11 |
ENST00000370355.3
|
stearoyl-CoA desaturase |
|
| chr20_+_10218808 Show fit | 1.97 |
ENST00000254976.7
ENST00000304886.6 |
synaptosome associated protein 25 |
|
| chr4_-_176002332 Show fit | 1.92 |
ENST00000280187.11
ENST00000512509.5 |
glycoprotein M6A |
|
| chr1_+_201283452 Show fit | 1.74 |
ENST00000263946.7
ENST00000367324.8 |
plakophilin 1 |
|
| chrX_-_110795765 Show fit | 1.73 |
ENST00000372045.5
ENST00000394797.8 ENST00000372042.6 ENST00000482160.5 ENST00000444321.2 |
chordin like 1 |
|
| chr1_+_76867469 Show fit | 1.65 |
ENST00000477717.6
|
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 |
|
| chr17_-_80476597 Show fit | 1.65 |
ENST00000306773.5
|
neuronal pentraxin 1 |
|
| chr8_-_13514821 Show fit | 1.62 |
ENST00000276297.9
|
DLC1 Rho GTPase activating protein |
|
| chr16_+_86510507 Show fit | 1.61 |
ENST00000262426.6
|
forkhead box F1 |
|
| chr10_-_30059510 Show fit | 1.47 |
ENST00000375377.2
|
junctional cadherin 5 associated |
Network of associatons between targets according to the STRING database.
First level regulatory network of AAUACUG
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.2 | GO:0070831 | basement membrane assembly(GO:0070831) |
| 0.0 | 2.1 | GO:0046949 | fatty-acyl-CoA biosynthetic process(GO:0046949) |
| 0.5 | 2.0 | GO:1990926 | short-term synaptic potentiation(GO:1990926) |
| 0.4 | 1.7 | GO:0048749 | compound eye development(GO:0048749) |
| 0.2 | 1.7 | GO:0045110 | intermediate filament bundle assembly(GO:0045110) |
| 0.1 | 1.7 | GO:0003360 | brainstem development(GO:0003360) |
| 0.1 | 1.7 | GO:0061162 | establishment of monopolar cell polarity(GO:0061162) |
| 0.0 | 1.7 | GO:0006688 | glycosphingolipid biosynthetic process(GO:0006688) |
| 0.0 | 1.7 | GO:0051491 | positive regulation of filopodium assembly(GO:0051491) |
| 0.5 | 1.6 | GO:0060458 | right lung development(GO:0060458) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.0 | GO:0043197 | dendritic spine(GO:0043197) |
| 0.3 | 2.2 | GO:0070032 | synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032) |
| 0.0 | 2.2 | GO:0043204 | perikaryon(GO:0043204) |
| 0.2 | 2.1 | GO:0002116 | semaphorin receptor complex(GO:0002116) |
| 0.0 | 2.0 | GO:0044853 | plasma membrane raft(GO:0044853) |
| 0.0 | 1.7 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
| 0.0 | 1.6 | GO:0044295 | axonal growth cone(GO:0044295) |
| 0.0 | 1.5 | GO:0032154 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
| 0.1 | 1.4 | GO:0045180 | basal cortex(GO:0045180) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0005262 | calcium channel activity(GO:0005262) |
| 0.3 | 2.1 | GO:0004768 | stearoyl-CoA 9-desaturase activity(GO:0004768) acyl-CoA desaturase activity(GO:0016215) |
| 0.1 | 2.0 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
| 0.0 | 2.0 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
| 0.0 | 1.8 | GO:0001618 | virus receptor activity(GO:0001618) |
| 0.2 | 1.7 | GO:0001665 | alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity(GO:0001665) |
| 0.1 | 1.7 | GO:0030280 | structural constituent of epidermis(GO:0030280) |
| 0.0 | 1.5 | GO:0042169 | SH2 domain binding(GO:0042169) |
| 0.0 | 1.5 | GO:0048365 | Rac GTPase binding(GO:0048365) |
| 0.0 | 1.4 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.0 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
| 0.1 | 1.9 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.0 | 1.9 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
| 0.0 | 1.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 1.5 | PID S1P S1P2 PATHWAY | S1P2 pathway |
| 0.0 | 1.4 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.0 | 1.1 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
| 0.0 | 1.1 | PID BMP PATHWAY | BMP receptor signaling |
| 0.0 | 1.1 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.8 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.1 | 3.3 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
| 0.1 | 1.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 1.7 | REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS | Genes involved in Apoptotic cleavage of cell adhesion proteins |
| 0.0 | 1.7 | REACTOME DEGRADATION OF THE EXTRACELLULAR MATRIX | Genes involved in Degradation of the extracellular matrix |
| 0.0 | 1.7 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |
| 0.0 | 1.4 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |
| 0.0 | 1.3 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
| 0.0 | 1.2 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
| 0.0 | 1.2 | REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | Genes involved in PKA-mediated phosphorylation of CREB |