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Illumina Body Map 2 (GSE30611)

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Results for AUGUGCC

Z-value: 0.38

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miRNA associated with seed AUGUGCC

NamemiRBASE accession
hsa-miR-455-5p
MIMAT0003150

Activity profile of AUGUGCC motif

Sorted Z-values of AUGUGCC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr11_-_128522264 1.18 ENST00000531611.5
ETS1
ETS proto-oncogene 1, transcription factor
chr5_+_83471736 1.13 ENST00000265077.8
VCAN
versican
chr6_+_89080739 0.98 ENST00000369472.1
ENST00000336032.4
PNRC1
proline rich nuclear receptor coactivator 1
chr9_-_72364504 0.96 ENST00000237937.7
ENST00000343431.6
ENST00000376956.3
ZFAND5
zinc finger AN1-type containing 5
chr8_-_81112055 0.88 ENST00000220597.4
PAG1
phosphoprotein membrane anchor with glycosphingolipid microdomains 1
chr1_+_101237009 0.83 ENST00000305352.7
S1PR1
sphingosine-1-phosphate receptor 1
chr22_+_40177917 0.69 ENST00000454349.7
ENST00000335727.13
TNRC6B
trinucleotide repeat containing adaptor 6B
chr15_+_63504583 0.66 ENST00000380324.8
ENST00000561442.5
ENST00000560070.5
USP3
ubiquitin specific peptidase 3
chr12_+_62260338 0.65 ENST00000353364.7
ENST00000549523.5
USP15
ubiquitin specific peptidase 15
chr10_+_19816395 0.65 ENST00000377252.5
PLXDC2
plexin domain containing 2
chr20_-_62065834 0.64 ENST00000252996.9
TAF4
TATA-box binding protein associated factor 4
chr5_-_176537361 0.61 ENST00000274811.9
RNF44
ring finger protein 44
chr18_-_76495191 0.55 ENST00000443185.7
ZNF516
zinc finger protein 516
chr17_-_78360066 0.53 ENST00000587578.1
ENST00000330871.3
SOCS3
suppressor of cytokine signaling 3
chr4_-_184474518 0.53 ENST00000393593.8
IRF2
interferon regulatory factor 2
chr10_-_15168667 0.45 ENST00000378165.9
NMT2
N-myristoyltransferase 2
chr10_-_92243246 0.41 ENST00000412050.8
ENST00000614585.4
CPEB3
cytoplasmic polyadenylation element binding protein 3
chrX_+_46573757 0.40 ENST00000276055.4
CHST7
carbohydrate sulfotransferase 7
chr12_+_94148553 0.40 ENST00000258526.9
PLXNC1
plexin C1
chr11_-_59668981 0.35 ENST00000300146.10
PATL1
PAT1 homolog 1, processing body mRNA decay factor
chr14_-_89619118 0.35 ENST00000345097.8
ENST00000555855.5
ENST00000555353.5
FOXN3
forkhead box N3
chr1_+_212285383 0.31 ENST00000261461.7
PPP2R5A
protein phosphatase 2 regulatory subunit B'alpha
chr17_-_1516601 0.31 ENST00000421807.7
ENST00000477910.5
ENST00000575172.5
INPP5K
inositol polyphosphate-5-phosphatase K
chr6_+_45328203 0.31 ENST00000371432.7
ENST00000647337.2
ENST00000371438.5
RUNX2
RUNX family transcription factor 2
chr7_+_39950187 0.31 ENST00000181839.10
CDK13
cyclin dependent kinase 13
chr3_+_31532901 0.29 ENST00000295770.4
STT3B
STT3 oligosaccharyltransferase complex catalytic subunit B
chr1_+_26695993 0.28 ENST00000324856.13
ENST00000637465.1
ARID1A
AT-rich interaction domain 1A
chr12_+_12717359 0.28 ENST00000614874.2
ENST00000228872.9
CDKN1B
cyclin dependent kinase inhibitor 1B
chr1_-_174022339 0.28 ENST00000367696.7
RC3H1
ring finger and CCCH-type domains 1
chr12_-_49060742 0.27 ENST00000301067.12
ENST00000683543.1
KMT2D
lysine methyltransferase 2D
chr3_-_12664101 0.27 ENST00000251849.9
ENST00000442415.7
RAF1
Raf-1 proto-oncogene, serine/threonine kinase
chrX_+_41334154 0.26 ENST00000441189.4
ENST00000644513.1
ENST00000644109.1
ENST00000646122.1
ENST00000644074.1
ENST00000644876.2
ENST00000399959.7
ENST00000646319.1
DDX3X
DEAD-box helicase 3 X-linked
chr7_+_103075123 0.25 ENST00000323716.8
ENST00000434153.1
ARMC10
armadillo repeat containing 10
chr18_+_13218769 0.25 ENST00000677055.1
ENST00000399848.7
LDLRAD4
low density lipoprotein receptor class A domain containing 4
chr22_+_38681941 0.23 ENST00000216034.6
TOMM22
translocase of outer mitochondrial membrane 22
chr2_+_84971093 0.21 ENST00000456682.1
ENST00000409785.9
KCMF1
potassium channel modulatory factor 1
chr7_-_155812454 0.20 ENST00000297261.7
SHH
sonic hedgehog signaling molecule
chr12_-_80937918 0.20 ENST00000552864.6
LIN7A
lin-7 homolog A, crumbs cell polarity complex component
chr11_+_18698768 0.20 ENST00000280734.3
TMEM86A
transmembrane protein 86A
chr13_-_49792675 0.19 ENST00000261667.8
KPNA3
karyopherin subunit alpha 3
chr2_+_60756226 0.17 ENST00000238714.8
PAPOLG
poly(A) polymerase gamma
chr19_+_1753499 0.17 ENST00000382349.5
ONECUT3
one cut homeobox 3
chr10_+_110919595 0.17 ENST00000369452.9
SHOC2
SHOC2 leucine rich repeat scaffold protein
chr12_+_113221429 0.17 ENST00000551096.5
ENST00000551099.5
ENST00000552897.5
ENST00000550785.5
ENST00000549279.1
ENST00000335509.11
TPCN1
two pore segment channel 1
chr2_+_105744876 0.16 ENST00000233154.9
ENST00000451463.6
NCK2
NCK adaptor protein 2
chr17_-_5486157 0.16 ENST00000572834.5
ENST00000158771.9
ENST00000570848.5
ENST00000571971.1
DERL2
derlin 2
chr20_-_50113139 0.15 ENST00000371657.9
ENST00000371674.8
ENST00000625172.3
ENST00000557021.5
ENST00000617119.4
UBE2V1
ubiquitin conjugating enzyme E2 V1
chr4_+_39698109 0.15 ENST00000510934.5
ENST00000261427.10
UBE2K
ubiquitin conjugating enzyme E2 K
chr8_-_8893548 0.15 ENST00000276282.7
MFHAS1
malignant fibrous histiocytoma amplified sequence 1
chr17_+_31936993 0.14 ENST00000322652.10
SUZ12
SUZ12 polycomb repressive complex 2 subunit
chr2_-_38751350 0.14 ENST00000409276.5
ENST00000313117.11
ENST00000446327.6
SRSF7
serine and arginine rich splicing factor 7
chr19_-_38849923 0.14 ENST00000601813.1
ENST00000221419.10
HNRNPL
heterogeneous nuclear ribonucleoprotein L
chr12_+_123584523 0.13 ENST00000438031.2
ENST00000262225.8
TMED2
transmembrane p24 trafficking protein 2
chr4_+_41935423 0.12 ENST00000504986.6
TMEM33
transmembrane protein 33
chr17_+_29390326 0.12 ENST00000261716.8
TAOK1
TAO kinase 1
chr6_+_104957099 0.12 ENST00000345080.5
LIN28B
lin-28 homolog B
chr1_-_10796636 0.12 ENST00000377022.8
ENST00000344008.5
CASZ1
castor zinc finger 1
chr12_-_57430956 0.11 ENST00000347140.7
ENST00000402412.5
R3HDM2
R3H domain containing 2
chr20_-_50153637 0.11 ENST00000341698.2
ENST00000371652.9
ENST00000371650.9
PEDS1-UBE2V1
PEDS1
PEDS1-UBE2V1 readthrough
plasmanylethanolamine desaturase 1
chr7_+_38977904 0.11 ENST00000518318.7
ENST00000403058.6
POU6F2
POU class 6 homeobox 2
chrX_+_44873169 0.11 ENST00000675577.1
ENST00000674867.1
ENST00000674586.1
ENST00000382899.9
ENST00000536777.6
ENST00000543216.6
ENST00000377967.9
ENST00000611820.5
KDM6A
lysine demethylase 6A
chr14_-_21269451 0.11 ENST00000336053.10
HNRNPC
heterogeneous nuclear ribonucleoprotein C
chr6_-_145814744 0.11 ENST00000237281.5
FBXO30
F-box protein 30
chr14_-_69153106 0.11 ENST00000341516.10
DCAF5
DDB1 and CUL4 associated factor 5
chrX_+_41085436 0.11 ENST00000324545.9
ENST00000378308.7
USP9X
ubiquitin specific peptidase 9 X-linked
chr18_+_65751000 0.10 ENST00000397968.4
CDH7
cadherin 7
chr13_-_51453015 0.10 ENST00000442263.4
ENST00000311234.9
INTS6
integrator complex subunit 6
chr21_-_15064934 0.10 ENST00000400199.5
ENST00000400202.5
ENST00000318948.7
NRIP1
nuclear receptor interacting protein 1
chr20_+_19758245 0.09 ENST00000255006.12
RIN2
Ras and Rab interactor 2
chr7_+_23299306 0.08 ENST00000466681.2
MALSU1
mitochondrial assembly of ribosomal large subunit 1
chr2_-_201451446 0.06 ENST00000332624.8
ENST00000430254.1
TRAK2
trafficking kinesin protein 2
chr17_-_28951285 0.05 ENST00000577226.5
PHF12
PHD finger protein 12
chr12_-_100142830 0.05 ENST00000356828.7
ENST00000279907.12
UHRF1BP1L
UHRF1 binding protein 1 like
chr19_-_32675139 0.04 ENST00000586693.7
ENST00000587352.5
ENST00000306065.9
ENST00000586463.5
ANKRD27
ankyrin repeat domain 27
chrX_+_12138426 0.03 ENST00000380682.5
ENST00000675598.1
FRMPD4
FERM and PDZ domain containing 4
chr1_+_193121950 0.03 ENST00000367435.5
CDC73
cell division cycle 73
chr1_-_114511160 0.03 ENST00000369543.6
ENST00000358465.7
TRIM33
tripartite motif containing 33
chr2_-_152099023 0.02 ENST00000201943.10
ENST00000427385.6
ENST00000539935.7
CACNB4
calcium voltage-gated channel auxiliary subunit beta 4
chr1_-_217089627 0.02 ENST00000361525.7
ESRRG
estrogen related receptor gamma
chr7_+_8433602 0.02 ENST00000405863.6
NXPH1
neurexophilin 1
chr5_+_103120149 0.02 ENST00000515845.5
ENST00000321521.13
ENST00000507921.5
PPIP5K2
diphosphoinositol pentakisphosphate kinase 2
chr13_-_98977975 0.02 ENST00000376460.5
DOCK9
dedicator of cytokinesis 9
chr17_-_64662290 0.01 ENST00000262435.14
SMURF2
SMAD specific E3 ubiquitin protein ligase 2
chr1_-_70205531 0.01 ENST00000370952.4
LRRC40
leucine rich repeat containing 40
chr3_-_177196451 0.01 ENST00000430069.5
ENST00000630796.2
ENST00000428970.5
TBL1XR1
TBL1X receptor 1
chr1_+_22563460 0.00 ENST00000166244.8
ENST00000374644.8
EPHA8
EPH receptor A8
chr15_+_58987652 0.00 ENST00000348370.9
ENST00000559160.1
RNF111
ring finger protein 111

Network of associatons between targets according to the STRING database.

First level regulatory network of AUGUGCC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0003245 cardiac muscle tissue growth involved in heart morphogenesis(GO:0003245)
0.1 0.4 GO:1900365 positive regulation of mRNA polyadenylation(GO:1900365)
0.1 0.5 GO:0060708 spongiotrophoblast differentiation(GO:0060708)
0.1 0.5 GO:0018008 N-terminal peptidyl-glycine N-myristoylation(GO:0018008)
0.1 1.2 GO:1904996 PML body organization(GO:0030578) positive regulation of leukocyte adhesion to vascular endothelial cell(GO:1904996)
0.1 0.6 GO:0035616 histone H2B conserved C-terminal lysine deubiquitination(GO:0035616)
0.1 1.0 GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA(GO:0031087)
0.1 0.2 GO:0030908 intein-mediated protein splicing(GO:0016539) protein splicing(GO:0030908) right lung development(GO:0060458) primary prostatic bud elongation(GO:0060516) epithelial-mesenchymal signaling involved in prostate gland development(GO:0060738) positive regulation of mesenchymal cell proliferation involved in ureter development(GO:2000729)
0.1 0.2 GO:1902594 viral penetration into host nucleus(GO:0075732) multi-organism nuclear import(GO:1902594)
0.1 0.3 GO:0043686 co-translational protein modification(GO:0043686)
0.1 0.3 GO:0006344 maintenance of chromatin silencing(GO:0006344)
0.1 0.3 GO:0001555 oocyte growth(GO:0001555)
0.1 0.3 GO:2001153 regulation of renal water transport(GO:2001151) positive regulation of renal water transport(GO:2001153)
0.0 1.1 GO:0030208 dermatan sulfate biosynthetic process(GO:0030208)
0.0 0.1 GO:0007402 ganglion mother cell fate determination(GO:0007402)
0.0 0.1 GO:0001543 ovarian follicle rupture(GO:0001543)
0.0 0.7 GO:0035278 miRNA mediated inhibition of translation(GO:0035278) negative regulation of translation, ncRNA-mediated(GO:0040033) regulation of translation, ncRNA-mediated(GO:0045974)
0.0 0.1 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.0 0.1 GO:1903371 regulation of endoplasmic reticulum tubular network organization(GO:1903371)
0.0 0.3 GO:0071651 mature ribosome assembly(GO:0042256) positive regulation of chemokine (C-C motif) ligand 5 production(GO:0071651)
0.0 0.3 GO:0060770 negative regulation of epithelial cell proliferation involved in prostate gland development(GO:0060770)
0.0 0.3 GO:0002051 osteoblast fate commitment(GO:0002051)
0.0 0.2 GO:0036493 positive regulation of translation in response to endoplasmic reticulum stress(GO:0036493)
0.0 0.2 GO:0045040 protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.3 GO:0090219 negative regulation of lipid kinase activity(GO:0090219)
0.0 0.4 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.0 0.1 GO:0090071 negative regulation of ribosome biogenesis(GO:0090071)
0.0 0.2 GO:1903361 protein localization to basolateral plasma membrane(GO:1903361)
0.0 0.7 GO:0016578 histone deubiquitination(GO:0016578)
0.0 1.0 GO:0003016 respiratory system process(GO:0003016)
0.0 0.1 GO:0010587 miRNA catabolic process(GO:0010587)
0.0 0.3 GO:0071550 death-inducing signaling complex assembly(GO:0071550)
0.0 0.4 GO:0030206 chondroitin sulfate biosynthetic process(GO:0030206)
0.0 0.3 GO:0046007 negative regulation of activated T cell proliferation(GO:0046007)
0.0 0.3 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.0 0.2 GO:1904153 negative regulation of protein exit from endoplasmic reticulum(GO:0070862) negative regulation of retrograde protein transport, ER to cytosol(GO:1904153)
0.0 0.2 GO:0010994 regulation of ubiquitin homeostasis(GO:0010993) free ubiquitin chain polymerization(GO:0010994)
0.0 0.2 GO:0010991 negative regulation of SMAD protein complex assembly(GO:0010991)
0.0 0.6 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 0.1 GO:0098937 dendritic transport(GO:0098935) anterograde dendritic transport(GO:0098937)
0.0 0.3 GO:0097094 craniofacial suture morphogenesis(GO:0097094)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0002945 cyclin K-CDK13 complex(GO:0002945)
0.1 0.2 GO:0035370 UBC13-UEV1A complex(GO:0035370)
0.0 0.6 GO:0033276 transcription factor TFTC complex(GO:0033276)
0.0 0.4 GO:0044666 MLL3/4 complex(GO:0044666)
0.0 0.7 GO:0070938 contractile ring(GO:0070938)
0.0 0.3 GO:0031464 Cul4A-RING E3 ubiquitin ligase complex(GO:0031464)
0.0 0.2 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.0 0.1 GO:0001739 sex chromatin(GO:0001739)
0.0 0.3 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.4 GO:0030014 CCR4-NOT complex(GO:0030014)
0.0 0.2 GO:0005785 signal recognition particle receptor complex(GO:0005785)
0.0 1.9 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0004379 glycylpeptide N-tetradecanoyltransferase activity(GO:0004379) myristoyltransferase activity(GO:0019107)
0.1 0.6 GO:0061649 ubiquitinated histone binding(GO:0061649)
0.1 0.3 GO:0043273 CTPase activity(GO:0043273)
0.0 0.4 GO:0001517 N-acetylglucosamine 6-O-sulfotransferase activity(GO:0001517)
0.0 0.8 GO:0038036 sphingosine-1-phosphate receptor activity(GO:0038036)
0.0 0.6 GO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly(GO:0001075)
0.0 0.7 GO:0035613 RNA stem-loop binding(GO:0035613)
0.0 0.4 GO:0034046 poly(G) binding(GO:0034046)
0.0 0.9 GO:0005068 transmembrane receptor protein tyrosine kinase adaptor activity(GO:0005068)
0.0 0.2 GO:0072345 NAADP-sensitive calcium-release channel activity(GO:0072345)
0.0 1.1 GO:0005540 hyaluronic acid binding(GO:0005540)
0.0 0.3 GO:0004445 inositol-polyphosphate 5-phosphatase activity(GO:0004445)
0.0 0.2 GO:0043237 laminin-1 binding(GO:0043237)
0.0 0.2 GO:0004652 polynucleotide adenylyltransferase activity(GO:0004652)
0.0 0.3 GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
0.0 0.4 GO:0017154 semaphorin receptor activity(GO:0017154)
0.0 1.2 GO:0035035 histone acetyltransferase binding(GO:0035035)
0.0 0.2 GO:0015266 protein channel activity(GO:0015266)
0.0 0.3 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861)
0.0 0.3 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.1 GO:0071558 histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0 0.1 GO:0097157 pre-mRNA intronic binding(GO:0097157)
0.0 0.2 GO:0097016 L27 domain binding(GO:0097016)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 PID TOLL ENDOGENOUS PATHWAY Endogenous TLR signaling
0.0 0.8 PID S1P META PATHWAY Sphingosine 1-phosphate (S1P) pathway
0.0 1.2 PID HIF2PATHWAY HIF-2-alpha transcription factor network
0.0 0.3 SA REG CASCADE OF CYCLIN EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.0 0.3 PID TCR RAS PATHWAY Ras signaling in the CD4+ TCR pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.1 REACTOME CS DS DEGRADATION Genes involved in CS/DS degradation
0.0 0.5 REACTOME MEMBRANE BINDING AND TARGETTING OF GAG PROTEINS Genes involved in Membrane binding and targetting of GAG proteins
0.0 0.9 REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS Genes involved in Phosphorylation of CD3 and TCR zeta chains
0.0 0.5 REACTOME IL 6 SIGNALING Genes involved in Interleukin-6 signaling
0.0 0.3 REACTOME RAF MAP KINASE CASCADE Genes involved in RAF/MAP kinase cascade
0.0 0.7 REACTOME REGULATORY RNA PATHWAYS Genes involved in Regulatory RNA pathways
0.0 0.4 REACTOME CHONDROITIN SULFATE BIOSYNTHESIS Genes involved in Chondroitin sulfate biosynthesis
0.0 0.4 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0 0.6 REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
0.0 0.5 REACTOME TRAF6 MEDIATED IRF7 ACTIVATION Genes involved in TRAF6 mediated IRF7 activation
0.0 0.4 REACTOME OTHER SEMAPHORIN INTERACTIONS Genes involved in Other semaphorin interactions