Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
EBF1 | hg38_v1_chr5_-_159099909_159099925 | -0.29 | 1.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr22_+_22887780 Show fit | 10.97 |
ENST00000532223.2
ENST00000526893.6 ENST00000531372.1 |
immunoglobulin lambda like polypeptide 5 |
|
chr14_-_106301848 Show fit | 5.31 |
ENST00000390611.2
|
immunoglobulin heavy variable 2-26 |
|
chr10_+_79610932 Show fit | 4.87 |
ENST00000428376.6
ENST00000398636.8 ENST00000419470.6 ENST00000429958.5 |
surfactant protein A1 |
|
chr6_-_31582415 Show fit | 4.59 |
ENST00000429299.3
ENST00000446745.2 |
lymphotoxin beta |
|
chr22_+_22880706 Show fit | 4.42 |
ENST00000390319.2
|
immunoglobulin lambda variable 3-1 |
|
chr12_-_48865863 Show fit | 4.20 |
ENST00000309739.6
|
Rho family GTPase 1 |
|
chr5_-_139389905 Show fit | 3.99 |
ENST00000302125.9
|
marginal zone B and B1 cell specific protein |
|
chr22_+_22697789 Show fit | 3.85 |
ENST00000390306.2
|
immunoglobulin lambda variable 2-23 |
|
chr22_-_37244237 Show fit | 3.85 |
ENST00000401529.3
ENST00000249071.11 |
Rac family small GTPase 2 |
|
chr22_+_22195753 Show fit | 3.79 |
ENST00000390285.4
|
immunoglobulin lambda variable 6-57 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 93.9 | GO:0006958 | complement activation, classical pathway(GO:0006958) |
0.2 | 38.0 | GO:0002377 | immunoglobulin production(GO:0002377) |
0.0 | 28.8 | GO:0043312 | neutrophil activation involved in immune response(GO:0002283) neutrophil degranulation(GO:0043312) |
0.7 | 13.1 | GO:0060263 | regulation of respiratory burst(GO:0060263) |
0.1 | 8.0 | GO:0006501 | C-terminal protein lipidation(GO:0006501) |
0.2 | 7.7 | GO:0071294 | cellular response to zinc ion(GO:0071294) |
0.1 | 7.2 | GO:0050853 | B cell receptor signaling pathway(GO:0050853) |
0.7 | 6.7 | GO:0070995 | NADPH oxidation(GO:0070995) |
0.1 | 6.7 | GO:0031295 | T cell costimulation(GO:0031295) |
0.7 | 5.2 | GO:0044027 | hypermethylation of CpG island(GO:0044027) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 41.8 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.0 | 40.0 | GO:0005615 | extracellular space(GO:0005615) |
0.0 | 32.5 | GO:0031226 | intrinsic component of plasma membrane(GO:0031226) |
0.1 | 23.3 | GO:0072562 | blood microparticle(GO:0072562) |
0.1 | 13.5 | GO:0101003 | ficolin-1-rich granule membrane(GO:0101003) |
0.1 | 12.5 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.4 | 11.1 | GO:0042599 | lamellar body(GO:0042599) |
0.1 | 9.7 | GO:0070821 | tertiary granule membrane(GO:0070821) |
0.0 | 9.6 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 9.3 | GO:0030667 | secretory granule membrane(GO:0030667) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 87.8 | GO:0003823 | antigen binding(GO:0003823) |
0.7 | 50.1 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.0 | 21.6 | GO:0003924 | GTPase activity(GO:0003924) |
0.0 | 15.9 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.7 | 12.0 | GO:0019864 | IgG binding(GO:0019864) |
0.0 | 7.5 | GO:0030246 | carbohydrate binding(GO:0030246) |
0.1 | 6.8 | GO:0001784 | phosphotyrosine binding(GO:0001784) |
0.4 | 5.7 | GO:0051525 | NFAT protein binding(GO:0051525) |
0.1 | 5.5 | GO:0005164 | tumor necrosis factor receptor binding(GO:0005164) |
0.0 | 5.3 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 20.2 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.2 | 16.0 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
0.2 | 14.3 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.0 | 9.7 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 8.1 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.1 | 7.3 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.1 | 7.1 | PID BCR 5PATHWAY | BCR signaling pathway |
0.1 | 7.1 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 6.9 | PID ARF6 PATHWAY | Arf6 signaling events |
0.1 | 6.2 | PID TOLL ENDOGENOUS PATHWAY | Endogenous TLR signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 15.5 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.2 | 10.6 | REACTOME SEMA4D INDUCED CELL MIGRATION AND GROWTH CONE COLLAPSE | Genes involved in Sema4D induced cell migration and growth-cone collapse |
0.1 | 8.6 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
0.1 | 7.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.0 | 6.8 | REACTOME G ALPHA I SIGNALLING EVENTS | Genes involved in G alpha (i) signalling events |
0.1 | 6.6 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.1 | 6.5 | REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS | Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers |
0.2 | 6.4 | REACTOME ADVANCED GLYCOSYLATION ENDPRODUCT RECEPTOR SIGNALING | Genes involved in Advanced glycosylation endproduct receptor signaling |
0.1 | 6.4 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
0.1 | 5.6 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |