Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
FOXF1 | hg38_v1_chr16_+_86510507_86510539 | 0.18 | 3.3e-01 | Click! |
FOXD3 | hg38_v1_chr1_+_63322558_63322583 | 0.12 | 5.2e-01 | Click! |
FOXI1 | hg38_v1_chr5_+_170105892_170105913 | 0.02 | 9.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_-_111910888 Show fit | 5.47 |
ENST00000525823.1
ENST00000528961.6 |
crystallin alpha B |
|
chr11_-_111910790 Show fit | 4.82 |
ENST00000533280.6
|
crystallin alpha B |
|
chr3_-_195583931 Show fit | 4.81 |
ENST00000343267.8
ENST00000421243.5 ENST00000453131.1 |
apolipoprotein D |
|
chr11_-_111910830 Show fit | 4.29 |
ENST00000526167.5
ENST00000651650.1 |
crystallin alpha B |
|
chr12_-_71157872 Show fit | 3.89 |
ENST00000546561.2
|
tetraspanin 8 |
|
chr6_+_125203639 Show fit | 3.48 |
ENST00000392482.6
|
TPD52 like 1 |
|
chr12_+_10212867 Show fit | 3.33 |
ENST00000545047.5
ENST00000266458.10 ENST00000629504.1 ENST00000543602.5 ENST00000545887.1 |
GABA type A receptor associated protein like 1 |
|
chr5_+_126371306 Show fit | 3.32 |
ENST00000506445.5
|
GRAM domain containing 2B |
|
chr5_+_174045673 Show fit | 3.31 |
ENST00000303177.8
ENST00000519867.5 |
neuronal vesicle trafficking associated 2 |
|
chr2_+_172860038 Show fit | 3.09 |
ENST00000538974.5
ENST00000540783.5 |
Rap guanine nucleotide exchange factor 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 14.7 | GO:0007021 | tubulin complex assembly(GO:0007021) |
0.2 | 10.4 | GO:0061049 | physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049) |
0.4 | 9.4 | GO:0043562 | cellular response to nitrogen starvation(GO:0006995) cellular response to nitrogen levels(GO:0043562) |
0.5 | 7.0 | GO:0072564 | response to linoleic acid(GO:0070543) blood microparticle formation(GO:0072564) regulation of blood microparticle formation(GO:2000332) positive regulation of blood microparticle formation(GO:2000334) |
0.1 | 6.8 | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome(GO:0000381) |
0.0 | 6.4 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
0.1 | 6.0 | GO:0000045 | autophagosome assembly(GO:0000045) |
0.1 | 5.2 | GO:0016339 | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339) |
1.2 | 4.9 | GO:2000097 | regulation of smooth muscle cell-matrix adhesion(GO:2000097) |
0.1 | 4.6 | GO:0048268 | clathrin coat assembly(GO:0048268) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.1 | GO:0030018 | Z disc(GO:0030018) |
0.9 | 14.6 | GO:0097512 | cardiac myofibril(GO:0097512) |
0.0 | 13.9 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.2 | 13.2 | GO:0032590 | dendrite membrane(GO:0032590) |
0.0 | 11.9 | GO:0030424 | axon(GO:0030424) |
0.2 | 9.8 | GO:0031092 | platelet alpha granule membrane(GO:0031092) |
0.0 | 8.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 7.6 | GO:0043025 | neuronal cell body(GO:0043025) |
0.0 | 5.5 | GO:0031965 | nuclear membrane(GO:0031965) |
0.0 | 5.4 | GO:0016605 | PML body(GO:0016605) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 14.2 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.2 | 9.9 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.2 | 9.4 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) |
0.3 | 8.8 | GO:0030957 | Tat protein binding(GO:0030957) |
0.1 | 7.9 | GO:0030552 | cAMP binding(GO:0030552) |
0.1 | 7.7 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.6 | 7.0 | GO:0070892 | lipoteichoic acid receptor activity(GO:0070892) |
0.0 | 6.4 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.0 | 6.3 | GO:0005516 | calmodulin binding(GO:0005516) |
0.0 | 5.7 | GO:0030165 | PDZ domain binding(GO:0030165) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.6 | PID FGF PATHWAY | FGF signaling pathway |
0.1 | 5.2 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
0.0 | 5.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 4.7 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.1 | 4.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 4.1 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 3.4 | PID RAS PATHWAY | Regulation of Ras family activation |
0.0 | 3.4 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 3.4 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
0.0 | 3.0 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 8.8 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 7.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 6.8 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.1 | 6.5 | REACTOME ANTIGEN PROCESSING CROSS PRESENTATION | Genes involved in Antigen processing-Cross presentation |
0.1 | 6.4 | REACTOME CA DEPENDENT EVENTS | Genes involved in Ca-dependent events |
0.1 | 6.2 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.2 | 5.6 | REACTOME FGFR2C LIGAND BINDING AND ACTIVATION | Genes involved in FGFR2c ligand binding and activation |
0.2 | 5.6 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
0.1 | 5.4 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.0 | 5.4 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |