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Illumina Body Map 2 (GSE30611)

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Results for GCCUGUC

Z-value: 0.23

Motif logo

miRNA associated with seed GCCUGUC

NamemiRBASE accession
MIMAT0004564

Activity profile of GCCUGUC motif

Sorted Z-values of GCCUGUC motif

Promoter Log-likelihood Transcript Gene Gene Info
chr7_-_19117625 0.36 ENST00000242261.6
twist family bHLH transcription factor 1
chr1_+_39491618 0.35 ENST00000331593.6
bone morphogenetic protein 8a
chr2_-_216695540 0.35 ENST00000233813.5
insulin like growth factor binding protein 5
chr6_+_21593742 0.31 ENST00000244745.4
SRY-box transcription factor 4
chr2_-_19358612 0.31 ENST00000272223.3
odd-skipped related transcription factor 1
chr11_+_76783349 0.27 ENST00000333090.5
tsukushi, small leucine rich proteoglycan
chr3_+_37452121 0.24 ENST00000264741.10
integrin subunit alpha 9
chr10_+_97713694 0.22 ENST00000285605.8
MARVEL domain containing 1
chr20_-_10673987 0.21 ENST00000254958.10
jagged canonical Notch ligand 1
chr6_-_39229465 0.19 ENST00000359534.4
potassium two pore domain channel subfamily K member 5
chr22_-_50307598 0.19 ENST00000425954.1
ENST00000449103.5
ENST00000359337.9
plexin B2
chr5_-_147453888 0.18 ENST00000398514.7
dihydropyrimidinase like 3
chr13_+_73058993 0.17 ENST00000377687.6
Kruppel like factor 5
chr13_+_113584683 0.16 ENST00000375370.10
transcription factor Dp-1
chr4_+_54229261 0.16 ENST00000508170.5
ENST00000512143.1
ENST00000257290.10
platelet derived growth factor receptor alpha
chr10_-_70132801 0.16 ENST00000307864.3
ENST00000613322.4
apoptosis inducing factor mitochondria associated 2
chr11_+_118883884 0.16 ENST00000292174.5
C-X-C motif chemokine receptor 5
chrX_+_100584928 0.14 ENST00000373031.5
tenomodulin
chr20_-_23049659 0.14 ENST00000377103.3
thrombomodulin
chr2_-_113278898 0.13 ENST00000554830.2
ENST00000263335.11
ENST00000348715.9
ENST00000397647.7
ENST00000681162.1
ENST00000263334.9
ENST00000429538.8
paired box 8
chr12_-_56258327 0.13 ENST00000267116.8
ankyrin repeat domain 52
chr9_-_124771304 0.12 ENST00000416460.6
ENST00000487099.7
nuclear receptor subfamily 6 group A member 1
chr3_-_197959977 0.11 ENST00000265239.11
IQ motif containing G
chr8_-_102655707 0.11 ENST00000285407.11
Kruppel like factor 10
chr10_-_116273009 0.10 ENST00000439649.8
ENST00000369234.5
ENST00000682194.1
ENST00000355422.11
GDNF family receptor alpha 1
chr19_+_39125769 0.10 ENST00000602004.1
ENST00000599470.5
ENST00000321944.8
ENST00000593480.5
ENST00000358301.7
ENST00000593690.5
ENST00000599386.5
p21 (RAC1) activated kinase 4
chr4_-_39458900 0.09 ENST00000503040.5
ENST00000508595.6
ENST00000295955.14
ENST00000645496.2
ribosomal protein L9
chr3_+_32817990 0.09 ENST00000383763.6
tripartite motif containing 71
chr1_+_210232776 0.09 ENST00000367012.4
SERTA domain containing 4
chr6_+_44219595 0.08 ENST00000393844.7
ENST00000652680.1
ENST00000643028.2
ENST00000371713.6
solute carrier family 29 member 1 (Augustine blood group)
chr4_+_127782270 0.08 ENST00000508549.5
ENST00000296464.9
heat shock protein family A (Hsp70) member 4 like
chr15_-_50265666 0.08 ENST00000543581.5
ENST00000267845.8
histidine decarboxylase
chr5_-_67196791 0.08 ENST00000256447.5
CD180 molecule
chr14_-_24429665 0.08 ENST00000267406.11
cerebellin 3 precursor
chr18_-_21111778 0.07 ENST00000399799.3
Rho associated coiled-coil containing protein kinase 1
chr15_-_65422894 0.07 ENST00000352385.3
immunoglobulin superfamily DCC subclass member 4
chr2_-_96870034 0.07 ENST00000305476.10
semaphorin 4C
chr17_-_63446168 0.07 ENST00000584031.5
ENST00000392976.5
cytochrome b561
chr2_-_42764116 0.07 ENST00000378661.3
oxoeicosanoid receptor 1
chr3_+_152299392 0.06 ENST00000498502.5
ENST00000545754.5
ENST00000357472.7
ENST00000324196.9
muscleblind like splicing regulator 1
chr3_+_3799424 0.06 ENST00000319331.4
leucine rich repeat neuronal 1
chr14_-_75660816 0.06 ENST00000256319.7
ergosterol biosynthesis 28 homolog
chr19_+_1753499 0.06 ENST00000382349.5
one cut homeobox 3
chr1_-_23531206 0.06 ENST00000361729.3
E2F transcription factor 2
chr3_+_114056728 0.06 ENST00000485050.5
ENST00000281273.8
ENST00000479882.5
ENST00000493014.1
queuine tRNA-ribosyltransferase accessory subunit 2
chr1_+_180230257 0.06 ENST00000263726.4
LIM homeobox 4
chr2_-_210171402 0.06 ENST00000281772.14
KAT8 regulatory NSL complex subunit 1 like
chr2_+_24793394 0.05 ENST00000380834.7
ENST00000260662.2
centromere protein O
chr11_-_57515686 0.05 ENST00000533263.1
ENST00000278426.8
solute carrier family 43 member 1
chr13_-_74133892 0.05 ENST00000377669.7
Kruppel like factor 12
chr1_-_243850070 0.05 ENST00000366539.6
ENST00000672578.1
AKT serine/threonine kinase 3
chr19_+_29942205 0.05 ENST00000392271.6
URI1 prefoldin like chaperone
chr11_-_62805429 0.04 ENST00000294172.7
ENST00000531131.1
ENST00000530875.5
ENST00000531709.6
nuclear RNA export factor 1
chr5_-_137754327 0.04 ENST00000314940.7
heterogeneous nuclear ribonucleoprotein A0
chr6_+_4021293 0.04 ENST00000337659.11
pre-mRNA processing factor 4B
chr11_+_67119245 0.04 ENST00000529006.7
ENST00000398645.6
lysine demethylase 2A
chr17_+_31936993 0.04 ENST00000322652.10
SUZ12 polycomb repressive complex 2 subunit
chr12_-_54280087 0.04 ENST00000209875.9
chromobox 5
chr17_+_2337480 0.04 ENST00000268989.8
ENST00000426855.6
small G protein signaling modulator 2
chr5_+_168291599 0.04 ENST00000265293.9
WW and C2 domain containing 1
chr12_-_120904337 0.03 ENST00000353487.7
signal peptide peptidase like 3
chr7_-_130440848 0.03 ENST00000675803.1
ENST00000223208.10
ENST00000343969.10
ENST00000471201.6
ENST00000675649.1
ENST00000675168.1
ENST00000469826.2
ENST00000334451.6
ENST00000675962.1
ENST00000675563.1
ENST00000480206.2
ENST00000489512.5
ENST00000676243.1
ENST00000674539.1
ENST00000675935.1
centrosomal protein 41
chr20_+_2101807 0.03 ENST00000381482.8
serine/threonine kinase 35
chr4_+_86934976 0.03 ENST00000507468.5
ENST00000395146.9
AF4/FMR2 family member 1
chr3_-_115071333 0.03 ENST00000462705.5
zinc finger and BTB domain containing 20
chr2_+_200811882 0.03 ENST00000409600.6
basic leucine zipper and W2 domains 1
chr1_+_244969869 0.03 ENST00000366523.5
EF-hand calcium binding domain 2
chr1_+_26826682 0.03 ENST00000374142.9
zinc finger DHHC-type palmitoyltransferase 18
chr1_+_117060309 0.03 ENST00000369466.9
transcription termination factor 2
chr16_-_85688912 0.03 ENST00000253462.8
GINS complex subunit 2
chr3_-_50611767 0.03 ENST00000443053.6
ENST00000348721.4
cytokine inducible SH2 containing protein
chr1_-_203086001 0.02 ENST00000241651.5
myogenin
chr7_-_128343823 0.02 ENST00000415472.6
ENST00000478061.5
ENST00000223073.6
ENST00000459726.1
RNA binding motif protein 28
chr11_+_14643782 0.02 ENST00000282096.9
phosphodiesterase 3B
chr19_+_41262480 0.02 ENST00000352456.7
ENST00000595018.5
ENST00000597725.5
heterogeneous nuclear ribonucleoprotein U like 1
chr22_-_42070778 0.02 ENST00000396398.8
ENST00000403363.5
ENST00000402937.1
alpha-N-acetylgalactosaminidase
chr4_+_705748 0.02 ENST00000419774.5
ENST00000362003.9
ENST00000400151.6
ENST00000427463.5
ENST00000470161.6
polycomb group ring finger 3
chr2_-_219160781 0.02 ENST00000356853.10
non-homologous end joining factor 1
chr10_-_43407769 0.02 ENST00000357065.8
heterogeneous nuclear ribonucleoprotein F
chr2_+_36355712 0.02 ENST00000280527.7
cysteine rich transmembrane BMP regulator 1
chr1_+_35883189 0.02 ENST00000674304.1
ENST00000373204.6
ENST00000674426.1
argonaute RISC component 1
chr3_-_197029775 0.02 ENST00000439320.1
ENST00000296351.8
ENST00000296350.10
melanotransferrin
chrX_-_18984090 0.01 ENST00000379942.5
phosphorylase kinase regulatory subunit alpha 2
chr9_-_114806031 0.01 ENST00000374045.5
TNF superfamily member 15
chr20_-_32207708 0.01 ENST00000246229.5
PLAG1 like zinc finger 2
chr22_+_29883158 0.01 ENST00000333027.7
ENST00000401950.7
ENST00000445401.5
ENST00000323630.9
ENST00000351488.7
myotubularin related protein 3
chr1_+_110211471 0.01 ENST00000369787.7
ENST00000413138.7
potassium voltage-gated channel subfamily C member 4
chrX_+_118727575 0.01 ENST00000371642.1
ENST00000371666.8
interleukin 13 receptor subunit alpha 1
chrX_-_108736556 0.01 ENST00000372129.4
insulin receptor substrate 4
chr3_-_196432397 0.00 ENST00000381887.7
ENST00000296328.9
ENST00000428095.1
UBX domain protein 7
chr6_-_75284736 0.00 ENST00000674038.1
ENST00000673730.1
ENST00000230461.11
transmembrane protein 30A
chr17_+_48107549 0.00 ENST00000580219.5
ENST00000452859.6
ENST00000393405.6
sorting nexin 11
chr5_-_160119389 0.00 ENST00000523662.1
ENST00000456329.7
ENST00000307063.9
PWWP domain containing 2A
chr2_+_134120169 0.00 ENST00000409645.5
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase
chr19_+_40717091 0.00 ENST00000263370.3
inositol-trisphosphate 3-kinase C

Network of associatons between targets according to the STRING database.

First level regulatory network of GCCUGUC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:2000276 negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276) cell proliferation involved in heart valve development(GO:2000793)
0.1 0.3 GO:1904204 regulation of skeletal muscle hypertrophy(GO:1904204)
0.1 0.5 GO:0061073 ciliary body morphogenesis(GO:0061073)
0.1 0.3 GO:2000697 osmosensory signaling pathway(GO:0007231) negative regulation of nephron tubule epithelial cell differentiation(GO:0072183) kidney smooth muscle tissue development(GO:0072194) negative regulation of epithelial cell differentiation involved in kidney development(GO:2000697)
0.1 0.3 GO:0035910 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.1 GO:2000612 thyroid-stimulating hormone secretion(GO:0070460) regulation of thyroid-stimulating hormone secretion(GO:2000612)
0.0 0.2 GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway(GO:0035790)
0.0 0.4 GO:0002024 diet induced thermogenesis(GO:0002024)
0.0 0.1 GO:1990086 lens fiber cell apoptotic process(GO:1990086)
0.0 0.1 GO:0021526 medial motor column neuron differentiation(GO:0021526)
0.0 0.1 GO:0035990 tendon cell differentiation(GO:0035990) tendon formation(GO:0035992)
0.0 0.2 GO:0070345 negative regulation of fat cell proliferation(GO:0070345)
0.0 0.1 GO:1903347 negative regulation of bicellular tight junction assembly(GO:1903347)
0.0 0.2 GO:0031580 membrane raft polarization(GO:0001766) membrane raft distribution(GO:0031580)
0.0 0.1 GO:0015862 uridine transport(GO:0015862)
0.0 0.2 GO:0032534 regulation of microvillus assembly(GO:0032534)
0.0 0.1 GO:0001692 histamine metabolic process(GO:0001692)
0.0 0.1 GO:0051918 negative regulation of fibrinolysis(GO:0051918)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0042567 insulin-like growth factor ternary complex(GO:0042567)
0.0 0.1 GO:0002177 manchette(GO:0002177)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0016649 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.0 0.2 GO:0005017 platelet-derived growth factor-activated receptor activity(GO:0005017)
0.0 0.3 GO:0031995 insulin-like growth factor II binding(GO:0031995)
0.0 0.4 GO:0070700 BMP receptor binding(GO:0070700)
0.0 0.1 GO:0004996 thyroid-stimulating hormone receptor activity(GO:0004996)
0.0 0.1 GO:0022865 transmembrane electron transfer carrier(GO:0022865)
0.0 0.1 GO:0001069 regulatory region RNA binding(GO:0001069)
0.0 0.2 GO:0035374 chondroitin sulfate binding(GO:0035374)
0.0 0.2 GO:0019911 structural constituent of myelin sheath(GO:0019911)
0.0 0.1 GO:0016167 glial cell-derived neurotrophic factor receptor activity(GO:0016167)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 REACTOME SIGNALING BY NOTCH4 Genes involved in Signaling by NOTCH4
0.0 0.3 REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs)