Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXA2 | hg38_v1_chr7_-_27102669_27102691 | 0.29 | 1.1e-01 | Click! |
HOXB1 | hg38_v1_chr17_-_48530910_48531026 | 0.04 | 8.5e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 17.9 | GO:0051611 | negative regulation of neurotransmitter uptake(GO:0051581) regulation of serotonin uptake(GO:0051611) negative regulation of serotonin uptake(GO:0051612) |
0.5 | 15.7 | GO:0048681 | negative regulation of axon regeneration(GO:0048681) |
1.3 | 15.4 | GO:0010739 | positive regulation of protein kinase A signaling(GO:0010739) |
0.1 | 9.7 | GO:1901385 | regulation of voltage-gated calcium channel activity(GO:1901385) |
2.2 | 8.8 | GO:0031456 | glycine betaine biosynthetic process from choline(GO:0019285) glycine betaine metabolic process(GO:0031455) glycine betaine biosynthetic process(GO:0031456) |
0.6 | 8.4 | GO:0034465 | response to carbon monoxide(GO:0034465) |
0.3 | 8.0 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
0.0 | 6.9 | GO:0001578 | microtubule bundle formation(GO:0001578) |
0.1 | 6.4 | GO:0030866 | cortical actin cytoskeleton organization(GO:0030866) |
0.2 | 5.3 | GO:0001502 | cartilage condensation(GO:0001502) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 18.2 | GO:0005938 | cell cortex(GO:0005938) |
0.0 | 17.5 | GO:0045121 | membrane raft(GO:0045121) |
0.1 | 15.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.1 | 11.2 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
0.0 | 10.1 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 9.3 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.1 | 8.1 | GO:0005901 | caveola(GO:0005901) |
0.3 | 8.0 | GO:0032982 | myosin filament(GO:0032982) |
0.1 | 6.8 | GO:0031092 | platelet alpha granule membrane(GO:0031092) |
0.3 | 5.7 | GO:0097427 | microtubule bundle(GO:0097427) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 15.7 | GO:1990459 | transferrin receptor binding(GO:1990459) |
0.6 | 15.4 | GO:0008179 | adenylate cyclase binding(GO:0008179) |
0.1 | 12.0 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.3 | 11.2 | GO:0008331 | high voltage-gated calcium channel activity(GO:0008331) |
0.3 | 8.8 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
0.8 | 8.4 | GO:0060072 | large conductance calcium-activated potassium channel activity(GO:0060072) |
0.3 | 8.0 | GO:0031432 | titin binding(GO:0031432) |
0.0 | 7.0 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
1.1 | 6.8 | GO:0060961 | phospholipase D inhibitor activity(GO:0060961) |
0.1 | 4.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 16.6 | PID BMP PATHWAY | BMP receptor signaling |
0.1 | 7.0 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.1 | 6.8 | PID ALPHA SYNUCLEIN PATHWAY | Alpha-synuclein signaling |
0.1 | 5.3 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.1 | 4.4 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.0 | 4.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 3.6 | PID RAS PATHWAY | Regulation of Ras family activation |
0.1 | 3.2 | PID S1P S1P2 PATHWAY | S1P2 pathway |
0.0 | 3.0 | PID ENDOTHELIN PATHWAY | Endothelins |
0.0 | 2.7 | PID FGF PATHWAY | FGF signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 15.7 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.1 | 13.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.0 | 8.8 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 8.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.1 | 6.8 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 6.4 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
0.0 | 6.1 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.1 | 3.7 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.1 | 2.9 | REACTOME SYNTHESIS OF VERY LONG CHAIN FATTY ACYL COAS | Genes involved in Synthesis of very long-chain fatty acyl-CoAs |
0.1 | 2.9 | REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |