Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXD13 | hg38_v1_chr2_+_176092715_176092729 | 0.63 | 1.1e-04 | Click! |
HOXC10 | hg38_v1_chr12_+_53985138_53985183 | 0.21 | 2.5e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 10.8 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
0.2 | 7.5 | GO:0006825 | copper ion transport(GO:0006825) |
1.8 | 7.4 | GO:2000097 | regulation of smooth muscle cell-matrix adhesion(GO:2000097) |
1.9 | 5.8 | GO:1904237 | regulation of substrate-dependent cell migration, cell attachment to substrate(GO:1904235) positive regulation of substrate-dependent cell migration, cell attachment to substrate(GO:1904237) |
1.8 | 5.4 | GO:1901877 | regulation of the force of heart contraction by cardiac conduction(GO:0086092) regulation of calcium ion binding(GO:1901876) negative regulation of calcium ion binding(GO:1901877) |
0.4 | 5.2 | GO:1904322 | response to forskolin(GO:1904321) cellular response to forskolin(GO:1904322) |
0.2 | 4.5 | GO:0003334 | keratinocyte development(GO:0003334) |
0.5 | 4.1 | GO:0060414 | aorta smooth muscle tissue morphogenesis(GO:0060414) |
0.6 | 3.7 | GO:0098923 | retrograde trans-synaptic signaling by soluble gas(GO:0098923) trans-synaptic signaling by soluble gas(GO:0099543) |
0.6 | 3.5 | GO:0051771 | negative regulation of nitric-oxide synthase biosynthetic process(GO:0051771) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 14.1 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.9 | 13.0 | GO:0030478 | actin cap(GO:0030478) |
0.0 | 11.6 | GO:0016323 | basolateral plasma membrane(GO:0016323) |
0.9 | 11.5 | GO:0005589 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.1 | 8.7 | GO:0097610 | cleavage furrow(GO:0032154) cell surface furrow(GO:0097610) |
0.0 | 6.1 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.2 | 5.4 | GO:0090533 | cation-transporting ATPase complex(GO:0090533) |
0.4 | 5.2 | GO:0005577 | fibrinogen complex(GO:0005577) |
0.0 | 5.1 | GO:0005796 | Golgi lumen(GO:0005796) |
0.1 | 5.0 | GO:0099738 | cell cortex region(GO:0099738) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 25.3 | GO:0005518 | collagen binding(GO:0005518) |
0.4 | 13.0 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.1 | 11.7 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.8 | 8.2 | GO:0016724 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.0 | 7.2 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.1 | 6.9 | GO:0015485 | cholesterol binding(GO:0015485) |
0.0 | 6.2 | GO:0008201 | heparin binding(GO:0008201) |
0.3 | 5.7 | GO:0031821 | G-protein coupled serotonin receptor binding(GO:0031821) |
0.1 | 5.5 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) |
0.9 | 5.4 | GO:0042030 | ATPase inhibitor activity(GO:0042030) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.1 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.2 | 10.5 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.0 | 9.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 6.3 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.1 | 6.3 | NABA COLLAGENS | Genes encoding collagen proteins |
0.2 | 5.8 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
0.1 | 5.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 3.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 3.1 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 2.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 17.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.3 | 10.8 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.2 | 8.8 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.2 | 6.8 | REACTOME GRB2 SOS PROVIDES LINKAGE TO MAPK SIGNALING FOR INTERGRINS | Genes involved in GRB2:SOS provides linkage to MAPK signaling for Intergrins |
0.1 | 6.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 5.2 | REACTOME ADENYLATE CYCLASE INHIBITORY PATHWAY | Genes involved in Adenylate cyclase inhibitory pathway |
0.2 | 4.4 | REACTOME ACTIVATED POINT MUTANTS OF FGFR2 | Genes involved in Activated point mutants of FGFR2 |
0.3 | 4.1 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 2.7 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
0.0 | 2.5 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |