Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXC11 | hg38_v1_chr12_+_53973108_53973140 | 0.18 | 3.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr2_-_189179754 Show fit | 3.63 |
ENST00000374866.9
ENST00000618828.1 |
collagen type V alpha 2 chain |
|
chr1_+_110451132 Show fit | 3.52 |
ENST00000271331.4
|
prokineticin 1 |
|
chrX_+_105948429 Show fit | 2.68 |
ENST00000540278.1
|
Nik related kinase |
|
chr5_-_111756245 Show fit | 2.63 |
ENST00000447165.6
|
neuronal regeneration related protein |
|
chr22_+_41560973 Show fit | 2.54 |
ENST00000306149.12
|
cold shock domain containing C2 |
|
chr12_+_53990585 Show fit | 2.50 |
ENST00000504315.1
|
homeobox C6 |
|
chr18_-_28177102 Show fit | 2.47 |
ENST00000413878.2
ENST00000269141.8 |
cadherin 2 |
|
chr12_+_54016879 Show fit | 2.33 |
ENST00000303406.4
|
homeobox C4 |
|
chr7_+_134779625 Show fit | 2.25 |
ENST00000454108.5
ENST00000361675.7 |
caldesmon 1 |
|
chr7_+_134779663 Show fit | 2.25 |
ENST00000361901.6
|
caldesmon 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.3 | GO:1902897 | regulation of postsynaptic density protein 95 clustering(GO:1902897) |
0.0 | 3.7 | GO:0009952 | anterior/posterior pattern specification(GO:0009952) |
0.9 | 3.6 | GO:1903225 | negative regulation of endodermal cell differentiation(GO:1903225) |
0.5 | 3.2 | GO:0035426 | extracellular matrix-cell signaling(GO:0035426) |
0.9 | 2.7 | GO:0060721 | spongiotrophoblast cell proliferation(GO:0060720) regulation of spongiotrophoblast cell proliferation(GO:0060721) cell proliferation involved in embryonic placenta development(GO:0060722) regulation of cell proliferation involved in embryonic placenta development(GO:0060723) |
0.1 | 2.6 | GO:0006825 | copper ion transport(GO:0006825) |
0.1 | 2.5 | GO:0006704 | glucocorticoid biosynthetic process(GO:0006704) |
0.0 | 2.4 | GO:0051781 | positive regulation of cell division(GO:0051781) |
0.2 | 2.1 | GO:0061669 | spontaneous neurotransmitter secretion(GO:0061669) spontaneous synaptic transmission(GO:0098814) |
0.4 | 2.0 | GO:0061032 | cardiac right ventricle formation(GO:0003219) visceral serous pericardium development(GO:0061032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | GO:0005916 | fascia adherens(GO:0005916) |
0.3 | 4.5 | GO:0030478 | actin cap(GO:0030478) |
0.0 | 4.0 | GO:0044291 | cell-cell contact zone(GO:0044291) |
0.9 | 3.6 | GO:0005588 | collagen type V trimer(GO:0005588) |
0.0 | 3.0 | GO:0005604 | basement membrane(GO:0005604) |
0.2 | 2.3 | GO:0005587 | collagen type IV trimer(GO:0005587) |
0.0 | 2.1 | GO:0048786 | presynaptic active zone(GO:0048786) |
0.1 | 1.7 | GO:0005677 | chromatin silencing complex(GO:0005677) |
0.1 | 1.1 | GO:0097550 | transcriptional preinitiation complex(GO:0097550) |
0.1 | 1.1 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.9 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 5.2 | GO:0045294 | alpha-catenin binding(GO:0045294) |
0.1 | 4.5 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.0 | 3.8 | GO:0017137 | Rab GTPase binding(GO:0017137) |
0.0 | 3.6 | GO:0008083 | growth factor activity(GO:0008083) |
0.4 | 3.2 | GO:0043237 | laminin-1 binding(GO:0043237) |
0.1 | 2.8 | GO:0008349 | MAP kinase kinase kinase kinase activity(GO:0008349) |
0.3 | 2.6 | GO:0016724 | ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724) |
0.8 | 2.5 | GO:0003845 | 11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity(GO:0003845) |
0.0 | 2.2 | GO:0070888 | E-box binding(GO:0070888) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.6 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.1 | 5.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 3.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.0 | 2.7 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.0 | 1.6 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.4 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 0.7 | PID ALK1 PATHWAY | ALK1 signaling events |
0.0 | 0.6 | PID ERB GENOMIC PATHWAY | Validated nuclear estrogen receptor beta network |
0.0 | 0.6 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.0 | 0.6 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.9 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 4.9 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.1 | 4.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 3.6 | REACTOME PEPTIDE LIGAND BINDING RECEPTORS | Genes involved in Peptide ligand-binding receptors |
0.0 | 3.2 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.1 | 2.6 | REACTOME METAL ION SLC TRANSPORTERS | Genes involved in Metal ion SLC transporters |
0.1 | 2.5 | REACTOME STEROID HORMONES | Genes involved in Steroid hormones |
0.0 | 1.6 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
0.0 | 1.5 | REACTOME PLATELET CALCIUM HOMEOSTASIS | Genes involved in Platelet calcium homeostasis |
0.0 | 1.4 | REACTOME SIGNALING BY BMP | Genes involved in Signaling by BMP |