Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
HOXC12 | hg38_v1_chr12_+_53954870_53954912 | 0.40 | 2.4e-02 | Click! |
HOXD12 | hg38_v1_chr2_+_176099787_176099812 | 0.13 | 4.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_+_53990585 Show fit | 2.45 |
ENST00000504315.1
|
homeobox C6 |
|
chr6_-_169250825 Show fit | 1.88 |
ENST00000676869.1
ENST00000676760.1 |
thrombospondin 2 |
|
chr3_-_195583931 Show fit | 1.70 |
ENST00000343267.8
ENST00000421243.5 ENST00000453131.1 |
apolipoprotein D |
|
chr12_-_91146195 Show fit | 1.62 |
ENST00000548218.1
|
decorin |
|
chr21_-_26843063 Show fit | 1.61 |
ENST00000678221.1
|
ADAM metallopeptidase with thrombospondin type 1 motif 1 |
|
chr21_-_26843012 Show fit | 1.55 |
ENST00000517777.6
|
ADAM metallopeptidase with thrombospondin type 1 motif 1 |
|
chr7_-_27140195 Show fit | 1.47 |
ENST00000522788.5
ENST00000317201.7 |
homeobox A3 |
|
chr10_+_24466487 Show fit | 1.45 |
ENST00000396446.5
ENST00000396445.5 ENST00000376451.4 |
KIAA1217 |
|
chr1_+_15756659 Show fit | 1.39 |
ENST00000375771.5
|
filamin binding LIM protein 1 |
|
chr7_-_27143672 Show fit | 1.36 |
ENST00000222726.4
|
homeobox A5 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0048706 | embryonic skeletal system development(GO:0048706) |
0.8 | 3.2 | GO:0001732 | formation of cytoplasmic translation initiation complex(GO:0001732) |
0.1 | 3.2 | GO:0001542 | ovulation from ovarian follicle(GO:0001542) |
0.2 | 2.9 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
0.4 | 2.8 | GO:0021615 | glossopharyngeal nerve morphogenesis(GO:0021615) |
0.1 | 2.5 | GO:0033623 | regulation of integrin activation(GO:0033623) |
0.0 | 2.2 | GO:0016525 | negative regulation of angiogenesis(GO:0016525) |
0.0 | 1.8 | GO:0044458 | motile cilium assembly(GO:0044458) |
0.4 | 1.7 | GO:2000097 | regulation of smooth muscle cell-matrix adhesion(GO:2000097) |
0.0 | 1.6 | GO:0030449 | regulation of complement activation(GO:0030449) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.6 | GO:0005604 | basement membrane(GO:0005604) |
0.3 | 3.2 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
0.2 | 2.9 | GO:0098647 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.0 | 2.9 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.0 | 2.7 | GO:0001725 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.0 | 2.5 | GO:0035578 | azurophil granule lumen(GO:0035578) |
0.0 | 1.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.1 | 1.1 | GO:1990630 | IRE1-RACK1-PP2A complex(GO:1990630) |
0.0 | 1.1 | GO:0031941 | filamentous actin(GO:0031941) |
0.0 | 1.0 | GO:0031092 | platelet alpha granule membrane(GO:0031092) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.0 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.1 | 3.7 | GO:0031005 | filamin binding(GO:0031005) |
0.6 | 3.2 | GO:0098808 | mRNA cap binding(GO:0098808) |
0.0 | 2.9 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.0 | 2.1 | GO:0071837 | HMG box domain binding(GO:0071837) |
0.0 | 1.4 | GO:0005164 | tumor necrosis factor receptor binding(GO:0005164) |
0.0 | 1.4 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.0 | 1.4 | GO:0015485 | cholesterol binding(GO:0015485) |
0.3 | 1.3 | GO:0003839 | gamma-glutamylcyclotransferase activity(GO:0003839) |
0.2 | 1.2 | GO:0008241 | peptidyl-dipeptidase activity(GO:0008241) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.2 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 4.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 2.4 | PID INTEGRIN A4B1 PATHWAY | Alpha4 beta1 integrin signaling events |
0.0 | 1.4 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.0 | 1.2 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 1.0 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 1.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
0.0 | 0.8 | PID CONE PATHWAY | Visual signal transduction: Cones |
0.0 | 0.8 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 0.8 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
0.0 | 3.4 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.1 | 2.9 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.1 | 2.5 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.0 | 1.2 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 1.2 | REACTOME ANTIGEN PROCESSING CROSS PRESENTATION | Genes involved in Antigen processing-Cross presentation |
0.1 | 1.1 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.0 | 1.1 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |
0.0 | 1.0 | REACTOME SIGNAL REGULATORY PROTEIN SIRP FAMILY INTERACTIONS | Genes involved in Signal regulatory protein (SIRP) family interactions |
0.0 | 1.0 | REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS | Genes involved in Transport of Ribonucleoproteins into the Host Nucleus |