Illumina Body Map 2 (GSE30611)
Gene Symbol | Gene ID | Gene Info |
---|---|---|
ENSG00000136944.19 | LIM homeobox transcription factor 1 beta | |
ENSG00000130675.15 | motor neuron and pancreas homeobox 1 | |
ENSG00000173976.16 | retina and anterior neural fold homeobox 2 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MNX1 | hg38_v1_chr7_-_157010615_157010668 | 0.30 | 9.7e-02 | Click! |
LMX1B | hg38_v1_chr9_+_126613922_126613946 | -0.07 | 6.9e-01 | Click! |
RAX2 | hg38_v1_chr19_-_3772211_3772238 | 0.03 | 8.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_159069252 Show fit | 3.02 |
ENST00000640015.1
ENST00000476809.7 ENST00000485419.7 |
IQCJ-SCHIP1 readthrough |
|
chr4_+_168497066 Show fit | 2.61 |
ENST00000261509.10
|
palladin, cytoskeletal associated protein |
|
chr18_+_34593312 Show fit | 2.47 |
ENST00000591816.6
ENST00000588125.5 ENST00000684610.1 ENST00000683705.1 ENST00000598334.5 ENST00000588684.5 ENST00000554864.7 ENST00000399121.9 ENST00000595022.5 |
dystrobrevin alpha |
|
chr10_-_29736956 Show fit | 2.15 |
ENST00000674475.1
|
supervillin |
|
chr12_+_80716906 Show fit | 2.12 |
ENST00000228644.4
|
myogenic factor 5 |
|
chr12_+_26195313 Show fit | 2.09 |
ENST00000422622.3
|
sarcospan |
|
chr17_+_7407838 Show fit | 1.96 |
ENST00000302926.7
|
neuroligin 2 |
|
chr4_+_168497044 Show fit | 1.96 |
ENST00000505667.6
|
palladin, cytoskeletal associated protein |
|
chr12_-_6124662 Show fit | 1.88 |
ENST00000261405.10
|
von Willebrand factor |
|
chr5_+_174724549 Show fit | 1.87 |
ENST00000239243.7
ENST00000507785.2 |
msh homeobox 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.5 | GO:0003334 | keratinocyte development(GO:0003334) |
0.1 | 4.7 | GO:0006120 | mitochondrial electron transport, NADH to ubiquinone(GO:0006120) |
0.4 | 3.8 | GO:0019276 | UDP-N-acetylgalactosamine metabolic process(GO:0019276) |
1.1 | 3.2 | GO:0043438 | acetoacetic acid metabolic process(GO:0043438) |
0.3 | 2.5 | GO:0090063 | positive regulation of microtubule nucleation(GO:0090063) |
0.2 | 2.3 | GO:0036371 | protein localization to T-tubule(GO:0036371) |
0.0 | 2.3 | GO:0007274 | neuromuscular synaptic transmission(GO:0007274) |
0.3 | 2.0 | GO:1904862 | inhibitory synapse assembly(GO:1904862) |
0.0 | 2.0 | GO:0061049 | physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049) |
0.5 | 1.9 | GO:0051795 | embryonic nail plate morphogenesis(GO:0035880) positive regulation of catagen(GO:0051795) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.8 | GO:0090665 | dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665) |
0.1 | 3.9 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
0.0 | 3.5 | GO:0043209 | myelin sheath(GO:0043209) |
0.0 | 3.4 | GO:0016605 | PML body(GO:0016605) |
0.0 | 3.2 | GO:0002102 | podosome(GO:0002102) |
0.0 | 3.2 | GO:0001650 | fibrillar center(GO:0001650) |
0.0 | 3.1 | GO:0042383 | sarcolemma(GO:0042383) |
0.2 | 2.5 | GO:0005869 | dynactin complex(GO:0005869) |
0.0 | 2.3 | GO:0043034 | costamere(GO:0043034) |
0.1 | 2.2 | GO:0036449 | microtubule minus-end(GO:0036449) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 6.7 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) |
0.1 | 4.7 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
1.0 | 4.0 | GO:0035248 | alpha-1,4-N-acetylgalactosaminyltransferase activity(GO:0035248) |
0.1 | 3.6 | GO:0042043 | neurexin family protein binding(GO:0042043) |
0.8 | 3.2 | GO:0016716 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen(GO:0016716) |
0.0 | 3.0 | GO:0030165 | PDZ domain binding(GO:0030165) |
0.0 | 3.0 | GO:0047485 | protein N-terminus binding(GO:0047485) |
0.0 | 2.5 | GO:0070840 | dynein complex binding(GO:0070840) |
0.0 | 2.3 | GO:0030507 | spectrin binding(GO:0030507) |
0.1 | 2.0 | GO:0008179 | adenylate cyclase binding(GO:0008179) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.4 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 3.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.0 | 2.4 | PID NCADHERIN PATHWAY | N-cadherin signaling events |
0.0 | 2.0 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.0 | 1.9 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.0 | 1.0 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 0.9 | PID P38 MKK3 6PATHWAY | p38 MAPK signaling pathway |
0.0 | 0.7 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.0 | 0.5 | PID EPHA FWDPATHWAY | EPHA forward signaling |
0.0 | 0.2 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
0.0 | 2.5 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 2.1 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 1.9 | REACTOME PLATELET ADHESION TO EXPOSED COLLAGEN | Genes involved in Platelet Adhesion to exposed collagen |
0.0 | 1.4 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
0.0 | 1.3 | REACTOME SYNTHESIS OF PA | Genes involved in Synthesis of PA |
0.0 | 1.1 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.1 | 1.0 | REACTOME PECAM1 INTERACTIONS | Genes involved in PECAM1 interactions |
0.1 | 1.0 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.1 | 0.8 | REACTOME DIGESTION OF DIETARY CARBOHYDRATE | Genes involved in Digestion of dietary carbohydrate |