Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYOD1 | hg38_v1_chr11_+_17719564_17719577 | 0.92 | 1.0e-13 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr19_-_45322867 Show fit | 25.96 |
ENST00000221476.4
|
creatine kinase, M-type |
|
chr17_+_35147807 Show fit | 20.79 |
ENST00000394570.7
ENST00000268876.9 |
unc-45 myosin chaperone B |
|
chr3_+_42685535 Show fit | 20.15 |
ENST00000287777.5
|
kelch like family member 40 |
|
chr4_-_176269213 Show fit | 19.65 |
ENST00000296525.7
|
ankyrin repeat and SOCS box containing 5 |
|
chr20_+_31819348 Show fit | 18.34 |
ENST00000375985.5
|
myosin light chain kinase 2 |
|
chr20_+_31819302 Show fit | 18.32 |
ENST00000375994.6
|
myosin light chain kinase 2 |
|
chr11_+_1838970 Show fit | 18.30 |
ENST00000381911.6
|
troponin I2, fast skeletal type |
|
chr8_-_41665261 Show fit | 16.75 |
ENST00000522231.5
ENST00000314214.12 ENST00000348036.8 ENST00000522543.5 |
ankyrin 1 |
|
chr2_-_174764436 Show fit | 16.65 |
ENST00000409323.1
ENST00000261007.9 ENST00000348749.9 ENST00000672640.1 |
cholinergic receptor nicotinic alpha 1 subunit |
|
chr16_+_30375820 Show fit | 16.38 |
ENST00000566955.1
|
myosin light chain, phosphorylatable, fast skeletal muscle |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 105.6 | GO:0033275 | muscle filament sliding(GO:0030049) actin-myosin filament sliding(GO:0033275) |
7.0 | 49.1 | GO:0032971 | regulation of muscle filament sliding(GO:0032971) |
4.4 | 39.2 | GO:0048630 | skeletal muscle tissue growth(GO:0048630) |
2.4 | 31.3 | GO:0030240 | skeletal muscle thin filament assembly(GO:0030240) |
2.0 | 30.5 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
1.2 | 27.8 | GO:0035090 | maintenance of apical/basal cell polarity(GO:0035090) maintenance of epithelial cell apical/basal polarity(GO:0045199) |
3.0 | 26.7 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
1.5 | 25.7 | GO:0006600 | creatine metabolic process(GO:0006600) |
0.1 | 25.6 | GO:0007519 | skeletal muscle tissue development(GO:0007519) |
0.7 | 21.5 | GO:0003009 | skeletal muscle contraction(GO:0003009) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 131.1 | GO:0030017 | sarcomere(GO:0030017) |
1.8 | 91.5 | GO:0005859 | muscle myosin complex(GO:0005859) |
3.2 | 66.6 | GO:0005861 | troponin complex(GO:0005861) |
1.5 | 48.0 | GO:0005892 | acetylcholine-gated channel complex(GO:0005892) |
1.3 | 46.8 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
0.5 | 38.2 | GO:0033017 | sarcoplasmic reticulum membrane(GO:0033017) |
2.0 | 33.9 | GO:0005862 | muscle thin filament tropomyosin(GO:0005862) |
0.3 | 30.8 | GO:0034707 | chloride channel complex(GO:0034707) |
0.4 | 25.6 | GO:0005891 | voltage-gated calcium channel complex(GO:0005891) |
1.4 | 19.2 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 139.4 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.1 | 60.3 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
4.0 | 56.3 | GO:0031014 | troponin T binding(GO:0031014) |
1.6 | 48.0 | GO:0022848 | acetylcholine-gated cation channel activity(GO:0022848) |
1.3 | 43.9 | GO:0097493 | structural molecule activity conferring elasticity(GO:0097493) |
3.7 | 36.7 | GO:0004687 | myosin light chain kinase activity(GO:0004687) |
0.4 | 34.1 | GO:0005245 | voltage-gated calcium channel activity(GO:0005245) |
0.2 | 32.3 | GO:0005254 | chloride channel activity(GO:0005254) |
1.1 | 27.5 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
1.2 | 26.7 | GO:0005344 | oxygen transporter activity(GO:0005344) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 44.9 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.5 | 40.2 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.3 | 28.7 | PID ERBB2 ERBB3 PATHWAY | ErbB2/ErbB3 signaling events |
0.2 | 22.8 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.1 | 9.4 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 5.9 | PID FOXO PATHWAY | FoxO family signaling |
0.1 | 5.8 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.1 | 5.8 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 5.1 | PID LKB1 PATHWAY | LKB1 signaling events |
0.1 | 4.6 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 145.3 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
1.0 | 57.5 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
2.2 | 48.0 | REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | Genes involved in Presynaptic nicotinic acetylcholine receptors |
0.1 | 33.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 27.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 15.5 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.6 | 15.2 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |
0.2 | 11.5 | REACTOME DARPP 32 EVENTS | Genes involved in DARPP-32 events |
0.4 | 9.3 | REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK | Genes involved in Regulation of Rheb GTPase activity by AMPK |
0.1 | 8.1 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |