Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NFATC2 | hg38_v1_chr20_-_51562829_51562853 | -0.54 | 1.3e-03 | Click! |
NFATC3 | hg38_v1_chr16_+_68085861_68085968 | -0.29 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_91946989 Show fit | 10.13 |
ENST00000556154.5
|
fibulin 5 |
|
chr14_-_91947383 Show fit | 8.47 |
ENST00000267620.14
|
fibulin 5 |
|
chr12_-_91179472 Show fit | 7.97 |
ENST00000550099.5
ENST00000546391.5 |
decorin |
|
chr3_-_100846405 Show fit | 7.91 |
ENST00000495591.5
ENST00000466947.5 |
ABI family member 3 binding protein |
|
chr12_-_91179355 Show fit | 7.87 |
ENST00000550563.5
ENST00000546370.5 |
decorin |
|
chr1_+_85580751 Show fit | 7.12 |
ENST00000451137.7
|
cellular communication network factor 1 |
|
chr14_+_24368020 Show fit | 6.23 |
ENST00000554050.5
ENST00000554903.1 ENST00000250373.9 ENST00000554779.1 ENST00000553708.5 |
nuclear factor of activated T cells 4 |
|
chr3_-_112641292 Show fit | 6.21 |
ENST00000439685.6
|
coiled-coil domain containing 80 |
|
chr15_+_96325935 Show fit | 5.65 |
ENST00000421109.6
|
nuclear receptor subfamily 2 group F member 2 |
|
chr7_+_30852273 Show fit | 5.16 |
ENST00000509504.2
|
novel protein, MINDY4 and AQP1 readthrough |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 24.2 | GO:1900747 | negative regulation of vascular endothelial growth factor signaling pathway(GO:1900747) |
1.4 | 18.6 | GO:0048251 | elastic fiber assembly(GO:0048251) |
0.1 | 15.4 | GO:0010811 | positive regulation of cell-substrate adhesion(GO:0010811) |
0.2 | 11.9 | GO:0016339 | calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339) |
0.5 | 9.7 | GO:0042340 | keratan sulfate catabolic process(GO:0042340) |
0.1 | 9.3 | GO:0030574 | collagen catabolic process(GO:0030574) |
0.2 | 8.5 | GO:0010842 | retina layer formation(GO:0010842) |
0.6 | 7.8 | GO:1903142 | positive regulation of endothelial cell development(GO:1901552) positive regulation of establishment of endothelial barrier(GO:1903142) |
0.2 | 7.6 | GO:0030214 | hyaluronan catabolic process(GO:0030214) |
0.0 | 7.3 | GO:2000257 | regulation of complement activation(GO:0030449) regulation of protein activation cascade(GO:2000257) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 31.0 | GO:0098647 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.5 | 19.6 | GO:0005614 | interstitial matrix(GO:0005614) |
1.9 | 18.6 | GO:0071953 | elastic fiber(GO:0071953) |
0.1 | 17.7 | GO:0005923 | bicellular tight junction(GO:0005923) |
0.0 | 15.7 | GO:0005667 | transcription factor complex(GO:0005667) |
0.1 | 9.5 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 9.4 | GO:0016324 | apical plasma membrane(GO:0016324) |
0.1 | 9.2 | GO:0031093 | platelet alpha granule lumen(GO:0031093) |
0.0 | 8.1 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.4 | 7.2 | GO:0071438 | invadopodium membrane(GO:0071438) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 46.6 | GO:0005518 | collagen binding(GO:0005518) |
0.0 | 19.2 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.1 | 18.4 | GO:0005178 | integrin binding(GO:0005178) |
0.3 | 16.8 | GO:0001968 | fibronectin binding(GO:0001968) |
0.0 | 12.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 8.5 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.3 | 7.9 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
0.2 | 7.9 | GO:0001972 | retinoic acid binding(GO:0001972) |
0.2 | 7.6 | GO:0008239 | dipeptidyl-peptidase activity(GO:0008239) |
0.2 | 7.5 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 41.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.5 | 34.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 23.9 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 16.6 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 15.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 11.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.2 | 10.7 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
0.1 | 6.9 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.1 | 6.5 | PID S1P S1P2 PATHWAY | S1P2 pathway |
0.1 | 5.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 23.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.7 | 22.9 | REACTOME CS DS DEGRADATION | Genes involved in CS/DS degradation |
0.1 | 14.7 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.6 | 9.7 | REACTOME KERATAN SULFATE DEGRADATION | Genes involved in Keratan sulfate degradation |
0.1 | 9.5 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.4 | 9.3 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
0.2 | 9.0 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.3 | 8.6 | REACTOME INTRINSIC PATHWAY | Genes involved in Intrinsic Pathway |
0.1 | 7.1 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 5.5 | REACTOME INTEGRIN CELL SURFACE INTERACTIONS | Genes involved in Integrin cell surface interactions |