Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NFIB | hg38_v1_chr9_-_14313843_14313985 | 0.68 | 1.6e-05 | Click! |
NFIX | hg38_v1_chr19_+_12995467_12995500 | 0.49 | 4.4e-03 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 51.4 | GO:0033275 | muscle filament sliding(GO:0030049) actin-myosin filament sliding(GO:0033275) |
0.1 | 40.5 | GO:0043687 | post-translational protein modification(GO:0043687) |
2.3 | 20.6 | GO:0031444 | slow-twitch skeletal muscle fiber contraction(GO:0031444) |
0.7 | 20.6 | GO:0003334 | keratinocyte development(GO:0003334) |
1.0 | 20.5 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.5 | 19.6 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
1.6 | 19.0 | GO:0072592 | oxygen metabolic process(GO:0072592) |
4.6 | 18.3 | GO:0001869 | regulation of complement activation, lectin pathway(GO:0001868) negative regulation of complement activation, lectin pathway(GO:0001869) |
1.0 | 17.3 | GO:0006600 | creatine metabolic process(GO:0006600) |
0.4 | 17.0 | GO:0060216 | definitive hemopoiesis(GO:0060216) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 146.1 | GO:0005578 | proteinaceous extracellular matrix(GO:0005578) |
0.3 | 100.8 | GO:0030017 | sarcomere(GO:0030017) |
0.1 | 66.4 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.3 | 43.2 | GO:0005796 | Golgi lumen(GO:0005796) |
0.9 | 38.1 | GO:0016327 | apicolateral plasma membrane(GO:0016327) |
1.7 | 36.6 | GO:0031089 | platelet dense granule lumen(GO:0031089) |
0.2 | 33.1 | GO:0031514 | motile cilium(GO:0031514) |
0.6 | 31.4 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.3 | 28.8 | GO:0031093 | platelet alpha granule lumen(GO:0031093) |
0.8 | 27.8 | GO:0005614 | interstitial matrix(GO:0005614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 53.3 | GO:0008201 | heparin binding(GO:0008201) |
0.4 | 47.1 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.4 | 43.5 | GO:0050840 | extracellular matrix binding(GO:0050840) |
0.4 | 41.7 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.9 | 36.4 | GO:0051371 | muscle alpha-actinin binding(GO:0051371) |
0.2 | 31.4 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
1.1 | 25.3 | GO:0005344 | oxygen transporter activity(GO:0005344) |
0.1 | 23.7 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
0.2 | 23.2 | GO:0051117 | ATPase binding(GO:0051117) |
0.6 | 21.7 | GO:0001972 | retinoic acid binding(GO:0001972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 199.8 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.3 | 136.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.2 | 49.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.5 | 45.0 | PID INTEGRIN1 PATHWAY | Beta1 integrin cell surface interactions |
0.3 | 26.5 | PID A6B1 A6B4 INTEGRIN PATHWAY | a6b1 and a6b4 Integrin signaling |
0.2 | 16.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.2 | 14.7 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.6 | 14.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.4 | 14.2 | PID VEGFR1 PATHWAY | VEGFR1 specific signals |
0.7 | 13.6 | ST INTERFERON GAMMA PATHWAY | Interferon gamma pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 79.5 | REACTOME MUSCLE CONTRACTION | Genes involved in Muscle contraction |
0.2 | 40.5 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.5 | 39.9 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.2 | 29.0 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.7 | 27.7 | REACTOME ENOS ACTIVATION AND REGULATION | Genes involved in eNOS activation and regulation |
0.3 | 27.5 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.9 | 27.1 | REACTOME REGULATION OF INSULIN LIKE GROWTH FACTOR IGF ACTIVITY BY INSULIN LIKE GROWTH FACTOR BINDING PROTEINS IGFBPS | Genes involved in Regulation of Insulin-like Growth Factor (IGF) Activity by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
1.0 | 26.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.4 | 20.5 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.4 | 20.0 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |