Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NR1H2 | hg38_v1_chr19_+_50358571_50358611 | -0.24 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_78063851 Show fit | 6.85 |
ENST00000281030.2
|
thyroid hormone responsive |
|
chr10_-_68527498 Show fit | 2.34 |
ENST00000609923.6
|
solute carrier family 25 member 16 |
|
chr2_-_216081759 Show fit | 2.05 |
ENST00000265322.8
|
peroxisomal trans-2-enoyl-CoA reductase |
|
chr12_+_31962466 Show fit | 2.02 |
ENST00000381054.3
|
retroelement silencing factor 1 |
|
chr4_-_70666884 Show fit | 1.70 |
ENST00000510614.5
|
joining chain of multimeric IgA and IgM |
|
chr4_-_70666961 Show fit | 1.64 |
ENST00000510437.5
|
joining chain of multimeric IgA and IgM |
|
chr9_-_104928139 Show fit | 1.56 |
ENST00000423487.6
ENST00000374733.1 ENST00000374736.8 ENST00000678995.1 |
ATP binding cassette subfamily A member 1 |
|
chr17_-_17823593 Show fit | 1.48 |
ENST00000423161.3
|
sterol regulatory element binding transcription factor 1 |
|
chr19_+_15640880 Show fit | 1.47 |
ENST00000586182.6
ENST00000221307.13 ENST00000591058.5 |
cytochrome P450 family 4 subfamily F member 3 |
|
chr16_-_29745951 Show fit | 1.38 |
ENST00000329410.4
|
chromosome 16 open reading frame 54 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 6.9 | GO:0006853 | carnitine shuttle(GO:0006853) |
0.3 | 3.3 | GO:0060267 | positive regulation of respiratory burst(GO:0060267) |
0.5 | 3.1 | GO:1901569 | leukotriene catabolic process(GO:0036100) leukotriene B4 catabolic process(GO:0036101) leukotriene B4 metabolic process(GO:0036102) icosanoid catabolic process(GO:1901523) fatty acid derivative catabolic process(GO:1901569) |
0.0 | 2.9 | GO:0006687 | glycosphingolipid metabolic process(GO:0006687) |
0.4 | 2.7 | GO:0009051 | pentose-phosphate shunt, oxidative branch(GO:0009051) |
0.1 | 2.5 | GO:0039536 | negative regulation of RIG-I signaling pathway(GO:0039536) |
0.0 | 2.3 | GO:0030521 | androgen receptor signaling pathway(GO:0030521) |
0.0 | 2.2 | GO:0032094 | response to food(GO:0032094) |
0.5 | 2.1 | GO:1903173 | phytol metabolic process(GO:0033306) fatty alcohol metabolic process(GO:1903173) |
0.1 | 1.8 | GO:0045542 | positive regulation of cholesterol biosynthetic process(GO:0045542) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0031903 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.8 | 3.3 | GO:0071757 | hexameric IgM immunoglobulin complex(GO:0071757) |
0.0 | 3.1 | GO:0030173 | integral component of Golgi membrane(GO:0030173) |
0.0 | 1.6 | GO:0034364 | high-density lipoprotein particle(GO:0034364) |
0.0 | 1.5 | GO:0012507 | ER to Golgi transport vesicle membrane(GO:0012507) |
0.0 | 1.4 | GO:0044232 | organelle membrane contact site(GO:0044232) |
0.0 | 1.4 | GO:0005762 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
0.4 | 1.1 | GO:0030689 | Noc complex(GO:0030689) |
0.1 | 1.0 | GO:0034688 | integrin alphaM-beta2 complex(GO:0034688) |
0.0 | 1.0 | GO:0031229 | integral component of nuclear inner membrane(GO:0005639) intrinsic component of nuclear inner membrane(GO:0031229) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.3 | GO:0019862 | IgA binding(GO:0019862) |
0.9 | 2.8 | GO:0052870 | tocopherol omega-hydroxylase activity(GO:0052870) alpha-tocopherol omega-hydroxylase activity(GO:0052871) 20-hydroxy-leukotriene B4 omega oxidase activity(GO:0097258) 20-aldehyde-leukotriene B4 20-monooxygenase activity(GO:0097259) |
0.4 | 2.3 | GO:0004882 | androgen receptor activity(GO:0004882) |
0.0 | 2.3 | GO:0015297 | antiporter activity(GO:0015297) |
0.7 | 2.1 | GO:0019166 | 2,4-dienoyl-CoA reductase (NADPH) activity(GO:0008670) trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166) |
0.5 | 2.1 | GO:0017057 | 6-phosphogluconolactonase activity(GO:0017057) |
0.0 | 2.0 | GO:0003785 | actin monomer binding(GO:0003785) |
0.2 | 1.8 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
0.5 | 1.6 | GO:0034188 | apolipoprotein A-I receptor activity(GO:0034188) phosphatidylserine-translocating ATPase activity(GO:0090556) |
0.1 | 1.6 | GO:0036312 | phosphatidylinositol 3-kinase regulatory subunit binding(GO:0036312) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.0 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 2.3 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.0 | 1.6 | PID INTEGRIN CS PATHWAY | Integrin family cell surface interactions |
0.0 | 1.2 | PID IL3 PATHWAY | IL3-mediated signaling events |
0.0 | 1.1 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
0.0 | 1.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.0 | 0.7 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.5 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
0.0 | 0.4 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 2.4 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.1 | 2.3 | REACTOME VITAMIN B5 PANTOTHENATE METABOLISM | Genes involved in Vitamin B5 (pantothenate) metabolism |
0.0 | 2.1 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.1 | 1.9 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 1.8 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 1.6 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 1.6 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
0.0 | 1.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.0 | 1.5 | REACTOME RORA ACTIVATES CIRCADIAN EXPRESSION | Genes involved in RORA Activates Circadian Expression |