Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
KLF4 | hg38_v1_chr9_-_107489754_107489776 | 0.67 | 2.9e-05 | Click! |
PATZ1 | hg38_v1_chr22_-_31346143_31346232 | 0.12 | 5.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr18_+_11981428 Show fit | 16.40 |
ENST00000625802.2
|
inositol monophosphatase 2 |
|
chr18_+_11981548 Show fit | 13.49 |
ENST00000588927.5
|
inositol monophosphatase 2 |
|
chr19_-_38735405 Show fit | 12.83 |
ENST00000597987.5
ENST00000595177.1 |
calpain 12 |
|
chr18_+_11981488 Show fit | 12.14 |
ENST00000269159.8
|
inositol monophosphatase 2 |
|
chr8_+_22599586 Show fit | 11.71 |
ENST00000289989.10
ENST00000409586.7 ENST00000614574.4 |
chromosome 8 open reading frame 58 |
|
chr2_+_11155372 Show fit | 11.20 |
ENST00000441908.6
ENST00000295083.8 |
solute carrier family 66 member 3 |
|
chr4_+_6693870 Show fit | 10.70 |
ENST00000296370.4
|
S100 calcium binding protein P |
|
chr7_-_149773207 Show fit | 10.62 |
ENST00000484747.5
|
zinc finger protein 467 |
|
chr14_+_105486867 Show fit | 10.59 |
ENST00000409393.6
ENST00000392531.4 |
cysteine rich protein 1 |
|
chr18_+_11981015 Show fit | 10.50 |
ENST00000589238.5
|
inositol monophosphatase 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 306.8 | GO:0042119 | neutrophil activation(GO:0042119) |
0.7 | 112.0 | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane(GO:0006614) |
0.5 | 92.3 | GO:0002433 | immune response-regulating cell surface receptor signaling pathway involved in phagocytosis(GO:0002433) Fc-gamma receptor signaling pathway involved in phagocytosis(GO:0038096) |
0.7 | 80.6 | GO:0006911 | phagocytosis, engulfment(GO:0006911) |
0.5 | 79.2 | GO:1902807 | negative regulation of cell cycle G1/S phase transition(GO:1902807) |
0.7 | 54.0 | GO:0006968 | cellular defense response(GO:0006968) |
6.3 | 50.6 | GO:0006021 | inositol biosynthetic process(GO:0006021) |
0.1 | 45.1 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
0.3 | 36.4 | GO:0002377 | immunoglobulin production(GO:0002377) |
1.7 | 32.4 | GO:0031274 | positive regulation of pseudopodium assembly(GO:0031274) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 361.6 | GO:0005654 | nucleoplasm(GO:0005654) |
0.5 | 219.8 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.3 | 205.5 | GO:0016604 | nuclear body(GO:0016604) |
0.8 | 125.3 | GO:0035578 | azurophil granule lumen(GO:0035578) |
0.2 | 119.2 | GO:0005925 | focal adhesion(GO:0005925) |
0.6 | 89.1 | GO:0101002 | ficolin-1-rich granule(GO:0101002) ficolin-1-rich granule lumen(GO:1904813) |
0.7 | 81.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 80.9 | GO:0005634 | nucleus(GO:0005634) |
0.7 | 75.9 | GO:0035577 | azurophil granule membrane(GO:0035577) |
0.5 | 75.3 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 153.4 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
0.5 | 127.1 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.6 | 121.1 | GO:0003823 | antigen binding(GO:0003823) |
0.2 | 97.1 | GO:0003712 | transcription cofactor activity(GO:0003712) |
0.4 | 92.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
1.3 | 79.1 | GO:0034987 | immunoglobulin receptor binding(GO:0034987) |
0.3 | 77.2 | GO:0005125 | cytokine activity(GO:0005125) |
0.5 | 67.2 | GO:0001227 | transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227) |
0.5 | 60.2 | GO:0005070 | SH3/SH2 adaptor activity(GO:0005070) |
0.1 | 56.0 | GO:0005096 | GTPase activator activity(GO:0005096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 147.7 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
1.1 | 91.9 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.7 | 81.0 | PID ILK PATHWAY | Integrin-linked kinase signaling |
1.1 | 77.3 | PID IL4 2PATHWAY | IL4-mediated signaling events |
1.2 | 65.2 | PID P38 MK2 PATHWAY | p38 signaling mediated by MAPKAP kinases |
0.4 | 61.0 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
1.0 | 60.7 | PID THROMBIN PAR1 PATHWAY | PAR1-mediated thrombin signaling events |
1.2 | 60.0 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.5 | 59.9 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.4 | 58.4 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 125.9 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
1.1 | 68.6 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
1.1 | 61.3 | REACTOME EFFECTS OF PIP2 HYDROLYSIS | Genes involved in Effects of PIP2 hydrolysis |
0.4 | 58.3 | REACTOME RESPONSE TO ELEVATED PLATELET CYTOSOLIC CA2 | Genes involved in Response to elevated platelet cytosolic Ca2+ |
1.1 | 56.3 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.2 | 47.0 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.3 | 44.0 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.5 | 43.3 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
1.4 | 42.6 | REACTOME PD1 SIGNALING | Genes involved in PD-1 signaling |
0.4 | 40.2 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |