Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SHOX2 | hg38_v1_chr3_-_158106408_158106424 | -0.25 | 1.7e-01 | Click! |
HOXC5 | hg38_v1_chr12_+_54033026_54033069 | 0.10 | 5.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr14_-_106038355 Show fit | 8.61 |
ENST00000390597.3
|
immunoglobulin heavy variable 2-5 |
|
chr2_+_90172802 Show fit | 8.22 |
ENST00000390277.3
|
immunoglobulin kappa variable 3D-11 |
|
chr2_-_88947820 Show fit | 8.15 |
ENST00000496168.1
|
immunoglobulin kappa variable 1-5 |
|
chr2_+_90220727 Show fit | 7.77 |
ENST00000471857.2
|
immunoglobulin kappa variable 1D-8 |
|
chr2_+_90038848 Show fit | 7.67 |
ENST00000390270.2
|
immunoglobulin kappa variable 3D-20 |
|
chr2_+_90100235 Show fit | 7.42 |
ENST00000492446.1
|
immunoglobulin kappa variable 1D-16 |
|
chr2_-_89085787 Show fit | 6.45 |
ENST00000390252.2
|
immunoglobulin kappa variable 3-15 |
|
chr14_-_106117159 Show fit | 5.95 |
ENST00000390601.3
|
immunoglobulin heavy variable 3-11 |
|
chr2_-_88861563 Show fit | 5.74 |
ENST00000624935.3
ENST00000390241.3 |
novel transcript immunoglobulin kappa joining 2 |
|
chr2_+_90114838 Show fit | 5.68 |
ENST00000417279.3
|
immunoglobulin kappa variable 3D-15 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 101.8 | GO:0006958 | complement activation, classical pathway(GO:0006958) |
0.3 | 64.1 | GO:0002377 | immunoglobulin production(GO:0002377) |
0.0 | 9.6 | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell(GO:0050911) |
1.8 | 9.0 | GO:0090290 | positive regulation of osteoclast proliferation(GO:0090290) |
0.1 | 6.5 | GO:0042267 | natural killer cell mediated cytotoxicity(GO:0042267) |
0.4 | 4.8 | GO:0015705 | iodide transport(GO:0015705) |
0.2 | 4.8 | GO:0072643 | interferon-gamma secretion(GO:0072643) |
0.1 | 4.6 | GO:0034260 | negative regulation of GTPase activity(GO:0034260) |
1.5 | 4.5 | GO:0002416 | IgG immunoglobulin transcytosis in epithelial cells mediated by FcRn immunoglobulin receptor(GO:0002416) |
0.0 | 4.5 | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane(GO:0006614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 91.3 | GO:0005615 | extracellular space(GO:0005615) |
0.2 | 34.5 | GO:0072562 | blood microparticle(GO:0072562) |
0.3 | 15.1 | GO:0042571 | immunoglobulin complex, circulating(GO:0042571) |
0.5 | 6.6 | GO:0005589 | collagen type VI trimer(GO:0005589) collagen beaded filament(GO:0098647) |
0.0 | 6.5 | GO:0016607 | nuclear speck(GO:0016607) |
0.0 | 5.7 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.0 | 5.3 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.0 | 5.1 | GO:0032432 | actin filament bundle(GO:0032432) |
0.1 | 5.0 | GO:0001772 | immunological synapse(GO:0001772) |
0.3 | 4.1 | GO:0035692 | macrophage migration inhibitory factor receptor complex(GO:0035692) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 153.4 | GO:0003823 | antigen binding(GO:0003823) |
0.0 | 9.6 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.3 | 9.0 | GO:0048018 | receptor agonist activity(GO:0048018) |
0.2 | 7.5 | GO:0031005 | filamin binding(GO:0031005) |
0.0 | 7.0 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.0 | 5.8 | GO:0005179 | hormone activity(GO:0005179) |
0.0 | 5.2 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 4.7 | GO:0005095 | GTPase inhibitor activity(GO:0005095) |
0.1 | 4.7 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
1.1 | 4.5 | GO:0019770 | IgG receptor activity(GO:0019770) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 7.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.1 | 5.4 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.1 | 5.3 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 5.1 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.1 | 4.9 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.1 | 4.5 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.0 | 4.1 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 3.7 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.0 | 2.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 2.7 | NABA COLLAGENS | Genes encoding collagen proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 11.1 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |
0.0 | 8.0 | REACTOME OLFACTORY SIGNALING PATHWAY | Genes involved in Olfactory Signaling Pathway |
0.1 | 6.2 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.0 | 5.7 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.0 | 5.6 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
0.1 | 5.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 5.2 | REACTOME FORMATION OF FIBRIN CLOT CLOTTING CASCADE | Genes involved in Formation of Fibrin Clot (Clotting Cascade) |
0.0 | 5.2 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.1 | 4.9 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
0.2 | 4.7 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |