Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SP3 | hg38_v1_chr2_-_173965356_173965380 | 0.48 | 5.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr16_+_1153202 Show fit | 14.44 |
ENST00000358590.8
ENST00000638323.1 |
calcium voltage-gated channel subunit alpha1 H |
|
chr16_+_1153098 Show fit | 12.45 |
ENST00000348261.11
|
calcium voltage-gated channel subunit alpha1 H |
|
chr6_-_106974721 Show fit | 8.73 |
ENST00000606017.2
ENST00000620405.1 |
CD24 molecule |
|
chr2_+_47369301 Show fit | 8.20 |
ENST00000263735.9
|
epithelial cell adhesion molecule |
|
chr20_+_45469745 Show fit | 7.64 |
ENST00000372676.8
ENST00000217425.9 ENST00000339946.7 |
WAP four-disulfide core domain 2 |
|
chr6_-_106975309 Show fit | 7.33 |
ENST00000615659.1
|
CD24 molecule |
|
chr22_-_43187078 Show fit | 7.20 |
ENST00000216129.7
|
tubulin tyrosine ligase like 12 |
|
chr22_-_50307598 Show fit | 6.93 |
ENST00000425954.1
ENST00000449103.5 ENST00000359337.9 |
plexin B2 |
|
chr20_-_49568101 Show fit | 6.89 |
ENST00000244043.5
|
prostaglandin I2 synthase |
|
chr19_-_1652576 Show fit | 6.82 |
ENST00000453954.6
ENST00000395423.7 ENST00000262965.12 ENST00000588136.7 |
transcription factor 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 51.0 | GO:0048232 | male gamete generation(GO:0048232) |
2.0 | 32.2 | GO:0038089 | positive regulation of cell migration by vascular endothelial growth factor signaling pathway(GO:0038089) |
0.2 | 31.5 | GO:0006613 | cotranslational protein targeting to membrane(GO:0006613) |
0.7 | 28.5 | GO:0016338 | calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules(GO:0016338) |
0.3 | 27.1 | GO:0045454 | cell redox homeostasis(GO:0045454) |
2.2 | 26.6 | GO:0035865 | cellular response to potassium ion(GO:0035865) |
3.8 | 26.5 | GO:0030421 | defecation(GO:0030421) |
0.9 | 26.5 | GO:0070208 | protein heterotrimerization(GO:0070208) |
5.4 | 21.5 | GO:0032600 | B cell receptor transport within lipid bilayer(GO:0032595) B cell receptor transport into membrane raft(GO:0032597) protein transport out of membrane raft(GO:0032599) chemokine receptor transport out of membrane raft(GO:0032600) negative regulation of transforming growth factor beta3 production(GO:0032913) chemokine receptor transport within lipid bilayer(GO:0033606) |
2.6 | 20.6 | GO:0006021 | inositol biosynthetic process(GO:0006021) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 223.0 | GO:0005634 | nucleus(GO:0005634) |
0.1 | 186.4 | GO:0070062 | extracellular exosome(GO:0070062) |
0.2 | 108.5 | GO:0005924 | cell-substrate adherens junction(GO:0005924) |
0.2 | 86.1 | GO:0005667 | transcription factor complex(GO:0005667) |
0.2 | 71.0 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
0.2 | 66.0 | GO:0031012 | extracellular matrix(GO:0031012) |
0.1 | 61.7 | GO:0016607 | nuclear speck(GO:0016607) |
0.2 | 59.4 | GO:0043296 | apical junction complex(GO:0043296) |
0.4 | 49.9 | GO:0001725 | stress fiber(GO:0001725) contractile actin filament bundle(GO:0097517) |
0.3 | 46.8 | GO:0031514 | motile cilium(GO:0031514) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 289.3 | GO:0003677 | DNA binding(GO:0003677) |
0.2 | 100.5 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
0.2 | 68.4 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 68.1 | GO:0045296 | cadherin binding(GO:0045296) |
0.4 | 60.3 | GO:0004867 | serine-type endopeptidase inhibitor activity(GO:0004867) |
0.3 | 56.0 | GO:0008201 | heparin binding(GO:0008201) |
0.2 | 44.7 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.9 | 37.6 | GO:0098641 | cadherin binding involved in cell-cell adhesion(GO:0098641) |
0.1 | 35.2 | GO:0003712 | transcription cofactor activity(GO:0003712) |
0.3 | 34.9 | GO:0001158 | enhancer sequence-specific DNA binding(GO:0001158) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 93.0 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.2 | 75.8 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
1.0 | 74.2 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
0.8 | 58.4 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.3 | 45.6 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
0.4 | 38.7 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.5 | 31.4 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.1 | 29.5 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.3 | 28.3 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
0.4 | 26.5 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 66.3 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.9 | 43.3 | REACTOME TIGHT JUNCTION INTERACTIONS | Genes involved in Tight junction interactions |
0.1 | 41.1 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
0.3 | 40.1 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
1.1 | 38.3 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |
0.5 | 34.0 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.7 | 33.1 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
0.6 | 27.4 | REACTOME CELL EXTRACELLULAR MATRIX INTERACTIONS | Genes involved in Cell-extracellular matrix interactions |
0.2 | 26.3 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
0.2 | 25.6 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |