Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
TFE3 | hg38_v1_chrX_-_49043345_49043365 | -0.32 | 7.8e-02 | Click! |
SREBF1 | hg38_v1_chr17_-_17823593_17823644 | -0.11 | 5.4e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 10.8 | GO:0015991 | ATP hydrolysis coupled proton transport(GO:0015991) |
1.4 | 8.3 | GO:0042819 | pyridoxine metabolic process(GO:0008614) pyridoxine biosynthetic process(GO:0008615) vitamin B6 biosynthetic process(GO:0042819) |
0.2 | 8.3 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) |
0.4 | 7.4 | GO:0060155 | platelet dense granule organization(GO:0060155) |
0.0 | 6.8 | GO:0032543 | mitochondrial translation(GO:0032543) |
0.3 | 5.9 | GO:0006957 | complement activation, alternative pathway(GO:0006957) |
0.4 | 5.6 | GO:0033299 | secretion of lysosomal enzymes(GO:0033299) |
0.2 | 5.3 | GO:0033572 | transferrin transport(GO:0033572) |
0.1 | 4.6 | GO:0006884 | cell volume homeostasis(GO:0006884) |
0.1 | 4.6 | GO:0030212 | hyaluronan metabolic process(GO:0030212) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 20.1 | GO:0005759 | mitochondrial matrix(GO:0005759) |
0.0 | 13.8 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.0 | 9.5 | GO:0005743 | mitochondrial inner membrane(GO:0005743) |
0.0 | 8.5 | GO:0043202 | lysosomal lumen(GO:0043202) |
0.2 | 8.4 | GO:0031083 | BLOC-1 complex(GO:0031083) |
0.0 | 6.8 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.1 | 6.5 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
0.4 | 6.2 | GO:0010009 | cytoplasmic side of endosome membrane(GO:0010009) |
0.5 | 6.0 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
0.0 | 5.0 | GO:0030658 | transport vesicle membrane(GO:0030658) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 9.6 | GO:0019003 | GDP binding(GO:0019003) |
0.4 | 8.6 | GO:0015929 | hexosaminidase activity(GO:0015929) |
0.3 | 8.4 | GO:0046961 | ATPase activity, coupled to transmembrane movement of ions, rotational mechanism(GO:0044769) proton-transporting ATPase activity, rotational mechanism(GO:0046961) |
2.1 | 8.3 | GO:0004733 | pyridoxamine-phosphate oxidase activity(GO:0004733) |
0.3 | 7.1 | GO:0005247 | voltage-gated chloride channel activity(GO:0005247) |
0.0 | 7.0 | GO:0016491 | oxidoreductase activity(GO:0016491) |
0.9 | 6.0 | GO:0004591 | oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591) |
0.0 | 5.9 | GO:0030276 | clathrin binding(GO:0030276) |
0.4 | 5.8 | GO:0004022 | alcohol dehydrogenase (NAD) activity(GO:0004022) |
0.1 | 5.1 | GO:0001972 | retinoic acid binding(GO:0001972) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 10.3 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.1 | 6.5 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
0.0 | 6.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.0 | 5.2 | PID P73PATHWAY | p73 transcription factor network |
0.0 | 3.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 3.0 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.1 | 2.7 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 2.5 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 2.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 2.1 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 19.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.4 | 14.7 | REACTOME TRANSFERRIN ENDOCYTOSIS AND RECYCLING | Genes involved in Transferrin endocytosis and recycling |
0.2 | 13.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.1 | 9.0 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.2 | 6.4 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.1 | 6.4 | REACTOME LYSOSOME VESICLE BIOGENESIS | Genes involved in Lysosome Vesicle Biogenesis |
0.2 | 5.2 | REACTOME BRANCHED CHAIN AMINO ACID CATABOLISM | Genes involved in Branched-chain amino acid catabolism |
0.2 | 5.1 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.0 | 4.9 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
0.2 | 4.8 | REACTOME CHYLOMICRON MEDIATED LIPID TRANSPORT | Genes involved in Chylomicron-mediated lipid transport |