Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYOG | hg38_v1_chr1_-_203086001_203086019 | 0.36 | 4.2e-02 | Click! |
TCF3 | hg38_v1_chr19_-_1650667_1650745 | -0.09 | 6.4e-01 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 81.2 | GO:0030049 | muscle filament sliding(GO:0030049) actin-myosin filament sliding(GO:0033275) |
1.4 | 24.2 | GO:0006600 | creatine metabolic process(GO:0006600) |
1.3 | 20.9 | GO:0048739 | cardiac muscle fiber development(GO:0048739) |
0.1 | 16.8 | GO:0031424 | keratinization(GO:0031424) |
1.6 | 15.9 | GO:0051694 | pointed-end actin filament capping(GO:0051694) |
1.4 | 15.1 | GO:0071688 | striated muscle myosin thick filament assembly(GO:0071688) |
5.0 | 15.0 | GO:1901899 | positive regulation of relaxation of cardiac muscle(GO:1901899) |
0.2 | 14.3 | GO:0030239 | myofibril assembly(GO:0030239) |
0.9 | 12.0 | GO:0036309 | protein localization to M-band(GO:0036309) |
0.5 | 11.6 | GO:0007021 | tubulin complex assembly(GO:0007021) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 87.6 | GO:0030017 | sarcomere(GO:0030017) |
1.4 | 39.0 | GO:0005865 | striated muscle thin filament(GO:0005865) |
0.6 | 37.8 | GO:0031430 | M band(GO:0031430) |
1.6 | 26.6 | GO:0097512 | cardiac myofibril(GO:0097512) |
1.5 | 24.7 | GO:0005862 | muscle thin filament tropomyosin(GO:0005862) |
0.2 | 20.9 | GO:0045095 | keratin filament(GO:0045095) |
0.1 | 16.1 | GO:0031093 | platelet alpha granule lumen(GO:0031093) |
2.2 | 15.1 | GO:1990393 | 3M complex(GO:1990393) |
1.1 | 15.0 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
0.5 | 13.9 | GO:0001518 | voltage-gated sodium channel complex(GO:0001518) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 110.1 | GO:0008307 | structural constituent of muscle(GO:0008307) |
0.2 | 35.3 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
0.0 | 33.1 | GO:0003779 | actin binding(GO:0003779) |
2.9 | 23.2 | GO:0004111 | creatine kinase activity(GO:0004111) |
1.4 | 19.5 | GO:0031014 | troponin T binding(GO:0031014) |
0.1 | 19.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.8 | 18.3 | GO:0005523 | tropomyosin binding(GO:0005523) |
0.1 | 13.1 | GO:0044325 | ion channel binding(GO:0044325) |
0.4 | 12.1 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
0.0 | 10.7 | GO:0004842 | ubiquitin-protein transferase activity(GO:0004842) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 23.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
0.1 | 19.0 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.2 | 16.1 | SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES | Genes related to regulation of the actin cytoskeleton |
0.1 | 12.3 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.2 | 12.1 | PID AURORA B PATHWAY | Aurora B signaling |
0.1 | 11.1 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.4 | 9.3 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
0.1 | 7.6 | PID SYNDECAN 2 PATHWAY | Syndecan-2-mediated signaling events |
0.1 | 7.0 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.2 | 5.9 | PID INTEGRIN5 PATHWAY | Beta5 beta6 beta7 and beta8 integrin cell surface interactions |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 69.0 | REACTOME STRIATED MUSCLE CONTRACTION | Genes involved in Striated Muscle Contraction |
0.4 | 26.2 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.3 | 13.8 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
0.3 | 9.8 | REACTOME GLYCOGEN BREAKDOWN GLYCOGENOLYSIS | Genes involved in Glycogen breakdown (glycogenolysis) |
0.0 | 9.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
0.1 | 9.1 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 8.9 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.2 | 8.8 | REACTOME HORMONE SENSITIVE LIPASE HSL MEDIATED TRIACYLGLYCEROL HYDROLYSIS | Genes involved in Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysis |
0.2 | 8.0 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.1 | 6.1 | REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | Genes involved in Loss of Nlp from mitotic centrosomes |