Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
TFDP1 | hg38_v1_chr13_+_113584683_113584762 | 0.12 | 5.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_+_134114673 Show fit | 7.26 |
ENST00000342854.10
ENST00000395029.5 |
transcription factor 7 |
|
chr12_+_94148553 Show fit | 5.51 |
ENST00000258526.9
|
plexin C1 |
|
chr17_+_47733228 Show fit | 4.71 |
ENST00000177694.2
|
T-box transcription factor 21 |
|
chr9_-_107489754 Show fit | 4.31 |
ENST00000610832.1
ENST00000374672.5 |
Kruppel like factor 4 |
|
chr17_-_63700100 Show fit | 4.23 |
ENST00000578993.5
ENST00000259006.8 ENST00000583211.5 |
LIM domain containing 2 |
|
chr20_+_3786772 Show fit | 4.12 |
ENST00000344256.10
ENST00000379598.9 |
cell division cycle 25B |
|
chrX_-_130110679 Show fit | 4.09 |
ENST00000335997.11
|
E74 like ETS transcription factor 4 |
|
chr19_-_42177295 Show fit | 4.03 |
ENST00000636631.1
|
POU class 2 homeobox 2 |
|
chr14_-_91417805 Show fit | 4.00 |
ENST00000389857.11
ENST00000553403.1 |
coiled-coil domain containing 88C |
|
chr9_+_79572715 Show fit | 3.95 |
ENST00000265284.10
|
TLE family member 4, transcriptional corepressor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 19.0 | GO:1904837 | beta-catenin-TCF complex assembly(GO:1904837) |
0.2 | 16.7 | GO:1902850 | microtubule cytoskeleton organization involved in mitosis(GO:1902850) |
0.5 | 13.9 | GO:0043981 | histone H4-K5 acetylation(GO:0043981) histone H4-K8 acetylation(GO:0043982) |
0.7 | 10.8 | GO:0070934 | CRD-mediated mRNA stabilization(GO:0070934) |
0.4 | 10.2 | GO:0006337 | nucleosome disassembly(GO:0006337) |
0.9 | 9.8 | GO:0001866 | NK T cell proliferation(GO:0001866) |
1.2 | 9.6 | GO:0048619 | embryonic genitalia morphogenesis(GO:0030538) embryonic hindgut morphogenesis(GO:0048619) |
0.1 | 9.2 | GO:0006369 | termination of RNA polymerase II transcription(GO:0006369) |
0.4 | 7.2 | GO:0007221 | positive regulation of transcription of Notch receptor target(GO:0007221) |
0.1 | 7.2 | GO:0043966 | histone H3 acetylation(GO:0043966) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 100.6 | GO:0005654 | nucleoplasm(GO:0005654) |
0.2 | 57.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.1 | 43.7 | GO:0016604 | nuclear body(GO:0016604) |
0.2 | 34.2 | GO:0016605 | PML body(GO:0016605) |
0.3 | 20.4 | GO:0090544 | BAF-type complex(GO:0090544) |
0.3 | 16.0 | GO:0005719 | nuclear euchromatin(GO:0005719) |
0.2 | 15.3 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
0.3 | 15.2 | GO:0044665 | MLL1/2 complex(GO:0044665) MLL1 complex(GO:0071339) |
0.1 | 10.4 | GO:0016363 | nuclear matrix(GO:0016363) |
0.1 | 9.4 | GO:0005876 | spindle microtubule(GO:0005876) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 42.4 | GO:0001047 | core promoter binding(GO:0001047) |
0.0 | 39.1 | GO:0003677 | DNA binding(GO:0003677) |
0.1 | 34.5 | GO:0000987 | core promoter proximal region sequence-specific DNA binding(GO:0000987) |
0.2 | 32.4 | GO:0042393 | histone binding(GO:0042393) |
0.2 | 26.8 | GO:0070491 | repressing transcription factor binding(GO:0070491) |
0.2 | 19.6 | GO:0030374 | ligand-dependent nuclear receptor transcription coactivator activity(GO:0030374) |
0.2 | 16.8 | GO:0035326 | enhancer binding(GO:0035326) |
0.1 | 15.5 | GO:0003697 | single-stranded DNA binding(GO:0003697) |
0.2 | 14.8 | GO:0004402 | histone acetyltransferase activity(GO:0004402) |
0.3 | 14.0 | GO:0031492 | nucleosomal DNA binding(GO:0031492) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 39.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.3 | 34.7 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.2 | 24.9 | PID CD8 TCR PATHWAY | TCR signaling in naïve CD8+ T cells |
0.2 | 23.7 | PID ILK PATHWAY | Integrin-linked kinase signaling |
0.1 | 20.5 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.3 | 18.1 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.3 | 17.9 | PID NFKAPPAB CANONICAL PATHWAY | Canonical NF-kappaB pathway |
0.2 | 14.6 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.2 | 12.4 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 11.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 28.2 | REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | Genes involved in NOTCH1 Intracellular Domain Regulates Transcription |
0.4 | 16.2 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
0.3 | 15.0 | REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | Genes involved in Downregulation of SMAD2/3:SMAD4 transcriptional activity |
0.1 | 13.6 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 11.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 11.0 | REACTOME MRNA SPLICING | Genes involved in mRNA Splicing |
0.2 | 10.7 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.2 | 10.5 | REACTOME NEGATIVE REGULATORS OF RIG I MDA5 SIGNALING | Genes involved in Negative regulators of RIG-I/MDA5 signaling |
0.6 | 9.6 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |
0.2 | 8.8 | REACTOME NUCLEAR EVENTS KINASE AND TRANSCRIPTION FACTOR ACTIVATION | Genes involved in Nuclear Events (kinase and transcription factor activation) |