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Illumina Body Map 2 (GSE30611)

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Results for UAAGACG

Z-value: 0.26

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miRNA associated with seed UAAGACG

NamemiRBASE accession
hsa-miR-208a-3p
MIMAT0000241
hsa-miR-208b-3p
MIMAT0004960

Activity profile of UAAGACG motif

Sorted Z-values of UAAGACG motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_-_23854796 0.77 ENST00000290271.7
STC1
stanniocalcin 1
chr5_-_159099909 0.59 ENST00000313708.11
EBF1
EBF transcription factor 1
chr7_-_140176970 0.32 ENST00000397560.7
KDM7A
lysine demethylase 7A
chr10_+_61901678 0.31 ENST00000644638.1
ENST00000681100.1
ENST00000279873.12
ARID5B
AT-rich interaction domain 5B
chr2_+_176122712 0.30 ENST00000249499.8
HOXD9
homeobox D9
chrY_+_12904860 0.29 ENST00000336079.8
DDX3Y
DEAD-box helicase 3 Y-linked
chr2_-_86337654 0.28 ENST00000165698.9
REEP1
receptor accessory protein 1
chr6_+_21593742 0.25 ENST00000244745.4
SOX4
SRY-box transcription factor 4
chr9_-_137302264 0.25 ENST00000356628.4
NRARP
NOTCH regulated ankyrin repeat protein
chr2_+_176116768 0.25 ENST00000249501.5
HOXD10
homeobox D10
chr3_+_61561561 0.24 ENST00000474889.6
PTPRG
protein tyrosine phosphatase receptor type G
chr1_+_42682388 0.23 ENST00000321358.12
ENST00000332220.10
YBX1
Y-box binding protein 1
chr1_-_225653045 0.23 ENST00000366843.6
ENST00000366844.7
ENAH
ENAH actin regulator
chr6_+_36678699 0.22 ENST00000405375.5
ENST00000244741.10
ENST00000373711.3
CDKN1A
cyclin dependent kinase inhibitor 1A
chr11_-_86955385 0.20 ENST00000531380.2
FZD4
frizzled class receptor 4
chr12_-_92145838 0.20 ENST00000256015.5
BTG1
BTG anti-proliferation factor 1
chr17_+_40287861 0.19 ENST00000209728.9
ENST00000580824.5
ENST00000577249.1
ENST00000649662.1
CDC6
cell division cycle 6
chr20_+_52972347 0.17 ENST00000371497.10
TSHZ2
teashirt zinc finger homeobox 2
chrX_-_115234088 0.16 ENST00000317135.13
LRCH2
leucine rich repeats and calponin homology domain containing 2
chr17_+_68512379 0.16 ENST00000392711.5
ENST00000585427.5
ENST00000589228.6
ENST00000536854.6
ENST00000588702.5
ENST00000589309.5
PRKAR1A
protein kinase cAMP-dependent type I regulatory subunit alpha
chr16_+_54930827 0.16 ENST00000394636.9
IRX5
iroquois homeobox 5
chr10_-_32056376 0.15 ENST00000302418.5
KIF5B
kinesin family member 5B
chr9_-_16870662 0.15 ENST00000380672.9
BNC2
basonuclin 2
chr10_-_35642286 0.15 ENST00000374694.3
FZD8
frizzled class receptor 8
chr8_+_57994455 0.15 ENST00000361488.7
FAM110B
family with sequence similarity 110 member B
chr3_+_43286512 0.14 ENST00000454177.5
ENST00000429705.6
ENST00000296088.12
ENST00000437827.1
SNRK
SNF related kinase
chr11_-_2929412 0.13 ENST00000314222.5
PHLDA2
pleckstrin homology like domain family A member 2
chrX_+_68829009 0.13 ENST00000204961.5
EFNB1
ephrin B1
chr13_-_49792675 0.13 ENST00000261667.8
KPNA3
karyopherin subunit alpha 3
chr6_+_104957099 0.13 ENST00000345080.5
LIN28B
lin-28 homolog B
chr14_+_105314711 0.12 ENST00000447393.6
ENST00000547217.5
PACS2
phosphofurin acidic cluster sorting protein 2
chr2_+_66435558 0.12 ENST00000488550.5
MEIS1
Meis homeobox 1
chr6_-_13711817 0.12 ENST00000011619.6
RANBP9
RAN binding protein 9
chr9_-_34126661 0.12 ENST00000361264.9
DCAF12
DDB1 and CUL4 associated factor 12
chr9_-_125189721 0.10 ENST00000456642.1
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
PPP6C
protein phosphatase 6 catalytic subunit
chr22_+_21417357 0.10 ENST00000407464.7
HIC2
HIC ZBTB transcriptional repressor 2
chr7_-_120858066 0.09 ENST00000222747.8
TSPAN12
tetraspanin 12
chr12_+_67648737 0.09 ENST00000344096.4
ENST00000393555.3
DYRK2
dual specificity tyrosine phosphorylation regulated kinase 2
chr17_+_40062956 0.09 ENST00000450525.7
THRA
thyroid hormone receptor alpha
chr14_-_34713788 0.09 ENST00000341223.8
CFL2
cofilin 2
chr3_-_15332526 0.09 ENST00000383791.8
SH3BP5
SH3 domain binding protein 5
chr7_-_44885446 0.08 ENST00000395699.5
PURB
purine rich element binding protein B
chr4_-_99950262 0.08 ENST00000296417.6
ENST00000651623.1
H2AZ1
H2A.Z variant histone 1
chr1_-_205813177 0.08 ENST00000367137.4
SLC41A1
solute carrier family 41 member 1
chr1_+_19596960 0.08 ENST00000617872.4
ENST00000322753.7
ENST00000602662.1
MICOS10
NBL1
mitochondrial contact site and cristae organizing system subunit 10
NBL1, DAN family BMP antagonist
chr1_-_38873322 0.08 ENST00000397572.5
ENST00000494695.4
MYCBP
MYC binding protein
chr6_+_37257762 0.08 ENST00000373491.3
TBC1D22B
TBC1 domain family member 22B
chr4_+_139015751 0.07 ENST00000280614.4
NOCT
nocturnin
chr1_+_96721762 0.07 ENST00000675735.1
ENST00000609116.5
ENST00000674951.1
ENST00000426398.3
ENST00000370197.5
ENST00000370198.5
PTBP2
polypyrimidine tract binding protein 2
chr14_-_50231570 0.07 ENST00000216373.10
SOS2
SOS Ras/Rho guanine nucleotide exchange factor 2
chr15_+_56918612 0.07 ENST00000438423.6
ENST00000267811.9
ENST00000333725.10
ENST00000559609.5
TCF12
transcription factor 12
chr3_-_18425295 0.06 ENST00000338745.11
ENST00000450898.1
SATB1
SATB homeobox 1
chr17_+_60600178 0.06 ENST00000629650.2
ENST00000305921.8
PPM1D
protein phosphatase, Mg2+/Mn2+ dependent 1D
chr16_-_46621345 0.06 ENST00000303383.8
SHCBP1
SHC binding and spindle associated 1
chr12_-_92929236 0.06 ENST00000322349.13
EEA1
early endosome antigen 1
chr13_+_49997019 0.06 ENST00000420995.6
ENST00000356017.8
ENST00000378182.4
ENST00000457662.2
TRIM13
tripartite motif containing 13
chr7_+_114414997 0.05 ENST00000462331.5
ENST00000393491.7
ENST00000403559.8
ENST00000408937.7
ENST00000393498.6
ENST00000393495.7
ENST00000378237.7
FOXP2
forkhead box P2
chr18_-_61892997 0.05 ENST00000312828.4
RNF152
ring finger protein 152
chr17_-_8630713 0.05 ENST00000411957.1
ENST00000360416.8
MYH10
myosin heavy chain 10
chr3_+_186783567 0.05 ENST00000323963.10
ENST00000440191.6
EIF4A2
eukaryotic translation initiation factor 4A2
chr10_-_87818153 0.05 ENST00000308448.11
ENST00000680024.1
ATAD1
ATPase family AAA domain containing 1
chr1_+_231162052 0.05 ENST00000366653.6
ENST00000444294.7
TRIM67
tripartite motif containing 67
chr1_-_55215345 0.05 ENST00000294383.7
USP24
ubiquitin specific peptidase 24
chr2_-_239400949 0.04 ENST00000345617.7
HDAC4
histone deacetylase 4
chr18_-_24397784 0.04 ENST00000399441.4
ENST00000319481.8
OSBPL1A
oxysterol binding protein like 1A
chr3_-_72446623 0.04 ENST00000477973.4
RYBP
RING1 and YY1 binding protein
chr1_-_16352420 0.04 ENST00000375592.8
FBXO42
F-box protein 42
chr15_+_44537136 0.04 ENST00000261868.10
ENST00000535391.5
EIF3J
eukaryotic translation initiation factor 3 subunit J
chr8_+_42896883 0.04 ENST00000307602.9
HOOK3
hook microtubule tethering protein 3
chr19_-_3700390 0.04 ENST00000679885.1
ENST00000537021.1
ENST00000589578.5
ENST00000539785.5
ENST00000335312.8
PIP5K1C
phosphatidylinositol-4-phosphate 5-kinase type 1 gamma
chr14_-_105021043 0.04 ENST00000392590.3
ENST00000336219.4
CDCA4
cell division cycle associated 4
chr17_-_50707855 0.04 ENST00000285243.7
ANKRD40
ankyrin repeat domain 40
chr2_-_207166818 0.04 ENST00000423015.5
KLF7
Kruppel like factor 7
chr14_-_26597430 0.03 ENST00000344429.9
ENST00000574031.1
ENST00000465357.6
ENST00000547619.5
NOVA1
NOVA alternative splicing regulator 1
chrX_+_137566119 0.03 ENST00000287538.10
ZIC3
Zic family member 3
chr3_+_89107649 0.03 ENST00000452448.6
ENST00000494014.1
EPHA3
EPH receptor A3
chr7_+_139231225 0.03 ENST00000473989.8
UBN2
ubinuclein 2
chr9_+_79571767 0.03 ENST00000376544.7
TLE4
TLE family member 4, transcriptional corepressor
chr22_+_29883158 0.02 ENST00000333027.7
ENST00000401950.7
ENST00000445401.5
ENST00000323630.9
ENST00000351488.7
MTMR3
myotubularin related protein 3
chr9_+_94030776 0.02 ENST00000375360.7
PTPDC1
protein tyrosine phosphatase domain containing 1
chr7_-_106661148 0.02 ENST00000523505.3
CCDC71L
coiled-coil domain containing 71 like
chr12_+_71754834 0.02 ENST00000261263.5
RAB21
RAB21, member RAS oncogene family
chr6_+_163414637 0.02 ENST00000453779.6
ENST00000275262.11
ENST00000392127.6
QKI
QKI, KH domain containing RNA binding
chr5_-_115544734 0.01 ENST00000274457.5
FEM1C
fem-1 homolog C
chr12_-_26125023 0.01 ENST00000242728.5
BHLHE41
basic helix-loop-helix family member e41
chr1_+_35931076 0.01 ENST00000397828.3
ENST00000373191.9
AGO3
argonaute RISC catalytic component 3
chr10_-_73495966 0.01 ENST00000342558.3
ENST00000360663.10
ENST00000394828.6
ENST00000394829.6
PPP3CB
protein phosphatase 3 catalytic subunit beta
chr12_-_42144823 0.00 ENST00000398675.8
GXYLT1
glucoside xylosyltransferase 1
chr2_-_173965356 0.00 ENST00000310015.12
SP3
Sp3 transcription factor

Network of associatons between targets according to the STRING database.

First level regulatory network of UAAGACG

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0061300 cerebellum vasculature development(GO:0061300)
0.1 0.3 GO:0035574 histone H4-K20 demethylation(GO:0035574)
0.1 0.8 GO:0001886 endothelial cell morphogenesis(GO:0001886)
0.1 0.3 GO:0035905 N-terminal peptidyl-lysine acetylation(GO:0018076) ascending aorta development(GO:0035905) ascending aorta morphogenesis(GO:0035910)
0.0 0.1 GO:0060721 spongiotrophoblast cell proliferation(GO:0060720) regulation of spongiotrophoblast cell proliferation(GO:0060721) cell proliferation involved in embryonic placenta development(GO:0060722) regulation of cell proliferation involved in embryonic placenta development(GO:0060723)
0.0 0.1 GO:0075732 viral penetration into host nucleus(GO:0075732) multi-organism nuclear import(GO:1902594)
0.0 0.1 GO:1905150 regulation of voltage-gated sodium channel activity(GO:1905150)
0.0 0.2 GO:0007089 traversing start control point of mitotic cell cycle(GO:0007089) response to vasopressin(GO:1904116) cellular response to vasopressin(GO:1904117)
0.0 0.2 GO:1903385 regulation of homophilic cell adhesion(GO:1903385)
0.0 0.2 GO:0060040 retinal bipolar neuron differentiation(GO:0060040)
0.0 0.3 GO:0014807 regulation of somitogenesis(GO:0014807)
0.0 0.2 GO:0060574 intestinal epithelial cell maturation(GO:0060574)
0.0 0.5 GO:0048935 peripheral nervous system neuron differentiation(GO:0048934) peripheral nervous system neuron development(GO:0048935)
0.0 0.1 GO:0010587 miRNA catabolic process(GO:0010587)
0.0 0.1 GO:0021757 caudate nucleus development(GO:0021757) putamen development(GO:0021758)
0.0 0.1 GO:0045925 positive regulation of female receptivity(GO:0045925)
0.0 0.1 GO:0038098 sequestering of BMP from receptor via BMP binding(GO:0038098)
0.0 0.2 GO:0070934 CRD-mediated mRNA stabilization(GO:0070934)
0.0 0.2 GO:2000271 positive regulation of fibroblast apoptotic process(GO:2000271)
0.0 0.3 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.0 0.1 GO:0010961 cellular magnesium ion homeostasis(GO:0010961)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0070557 PCNA-p21 complex(GO:0070557)
0.0 0.1 GO:1990851 Wnt-Frizzled-LRP5/6 complex(GO:1990851)
0.0 0.2 GO:0071204 histone pre-mRNA 3'end processing complex(GO:0071204)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0035575 histone demethylase activity (H4-K20 specific)(GO:0035575)
0.0 0.2 GO:0019912 cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0 0.1 GO:0099609 microtubule lateral binding(GO:0099609)
0.0 0.3 GO:0031849 olfactory receptor binding(GO:0031849)
0.0 0.2 GO:0005499 vitamin D binding(GO:0005499)
0.0 0.4 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.6 GO:0070742 C2H2 zinc finger domain binding(GO:0070742)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.