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Illumina Body Map 2 (GSE30611)

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Results for UGACAUC

Z-value: 0.27

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miRNA associated with seed UGACAUC

NamemiRBASE accession
hsa-miR-489-3p
MIMAT0002805

Activity profile of UGACAUC motif

Sorted Z-values of UGACAUC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr1_+_65264694 0.59 ENST00000263441.11
ENST00000395325.7
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6
chr19_-_55443263 0.49 ENST00000416792.2
ENST00000376325.10
SHISA7
shisa family member 7
chr20_+_10218808 0.41 ENST00000254976.7
ENST00000304886.6
SNAP25
synaptosome associated protein 25
chr7_+_43112593 0.40 ENST00000453890.5
ENST00000395891.7
HECW1
HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
chr7_+_31052297 0.37 ENST00000304166.9
ADCYAP1R1
ADCYAP receptor type I
chr1_-_83999097 0.34 ENST00000260505.13
ENST00000610996.1
TTLL7
tubulin tyrosine ligase like 7
chr9_+_74497308 0.34 ENST00000376896.8
RORB
RAR related orphan receptor B
chr2_-_100322495 0.34 ENST00000393437.8
LONRF2
LON peptidase N-terminal domain and ring finger 2
chr6_+_122996227 0.31 ENST00000275162.10
CLVS2
clavesin 2
chr15_+_62561361 0.31 ENST00000561311.5
TLN2
talin 2
chr7_+_107470050 0.30 ENST00000304402.6
GPR22
G protein-coupled receptor 22
chr2_+_165239388 0.28 ENST00000424833.5
ENST00000375437.7
ENST00000631182.3
SCN2A
sodium voltage-gated channel alpha subunit 2
chr19_-_18204026 0.27 ENST00000222256.9
ENST00000464076.3
RAB3A
RAB3A, member RAS oncogene family
chr16_+_24256313 0.27 ENST00000005284.4
CACNG3
calcium voltage-gated channel auxiliary subunit gamma 3
chr3_+_84958963 0.26 ENST00000383699.8
CADM2
cell adhesion molecule 2
chr15_+_51341648 0.26 ENST00000335449.11
ENST00000560215.5
GLDN
gliomedin
chr1_+_171841466 0.25 ENST00000367733.6
ENST00000627582.3
ENST00000355305.9
ENST00000367731.5
DNM3
dynamin 3
chr11_-_31811314 0.25 ENST00000640368.2
ENST00000379123.10
ENST00000379115.9
ENST00000419022.6
ENST00000643871.1
ENST00000640610.1
ENST00000639034.2
PAX6
paired box 6
chrX_+_111096136 0.24 ENST00000372007.10
PAK3
p21 (RAC1) activated kinase 3
chr5_+_58583068 0.23 ENST00000282878.6
RAB3C
RAB3C, member RAS oncogene family
chr4_-_138242325 0.23 ENST00000280612.9
SLC7A11
solute carrier family 7 member 11
chr13_+_96090098 0.21 ENST00000376705.4
HS6ST3
heparan sulfate 6-O-sulfotransferase 3
chr14_+_79279403 0.20 ENST00000281127.11
NRXN3
neurexin 3
chr1_+_50108856 0.20 ENST00000650764.1
ENST00000494555.2
ENST00000371824.7
ENST00000371823.8
ENST00000652693.1
ELAVL4
ELAV like RNA binding protein 4
chr19_-_45973863 0.20 ENST00000263257.6
NOVA2
NOVA alternative splicing regulator 2
chrX_-_74614612 0.19 ENST00000349225.2
ENST00000332687.11
RLIM
ring finger protein, LIM domain interacting
chr4_+_165378998 0.19 ENST00000402744.9
CPE
carboxypeptidase E
chr11_-_132943671 0.18 ENST00000331898.11
OPCML
opioid binding protein/cell adhesion molecule like
chr14_-_25049889 0.16 ENST00000419632.6
ENST00000396700.5
STXBP6
syntaxin binding protein 6
chr11_+_105610066 0.16 ENST00000282499.10
ENST00000393127.6
ENST00000527669.1
GRIA4
glutamate ionotropic receptor AMPA type subunit 4
chr6_+_96924720 0.16 ENST00000369261.9
KLHL32
kelch like family member 32
chr16_-_62036399 0.16 ENST00000584337.5
CDH8
cadherin 8
chr2_+_165469647 0.14 ENST00000421875.5
ENST00000314499.11
ENST00000409664.5
ENST00000651982.1
CSRNP3
cysteine and serine rich nuclear protein 3
chr4_-_152536045 0.14 ENST00000603548.6
ENST00000281708.10
FBXW7
F-box and WD repeat domain containing 7
chrX_+_101078861 0.13 ENST00000372930.5
TMEM35A
transmembrane protein 35A
chr2_+_30146941 0.13 ENST00000379520.7
ENST00000379519.7
YPEL5
yippee like 5
chr2_-_157628852 0.12 ENST00000243349.13
ACVR1C
activin A receptor type 1C
chr7_-_128031422 0.12 ENST00000249363.4
LRRC4
leucine rich repeat containing 4
chr17_+_29390326 0.12 ENST00000261716.8
TAOK1
TAO kinase 1
chr18_+_52340179 0.12 ENST00000442544.7
DCC
DCC netrin 1 receptor
chr3_-_179071742 0.11 ENST00000311417.7
ENST00000652290.1
ZMAT3
zinc finger matrin-type 3
chr13_-_72727600 0.11 ENST00000377818.4
MZT1
mitotic spindle organizing protein 1
chr8_-_88327475 0.10 ENST00000286614.11
MMP16
matrix metallopeptidase 16
chr14_+_90397019 0.10 ENST00000447653.8
ENST00000356978.9
ENST00000626705.2
CALM1
calmodulin 1
chr4_-_52659238 0.10 ENST00000451218.6
ENST00000441222.8
USP46
ubiquitin specific peptidase 46
chr2_+_14632688 0.10 ENST00000331243.4
ENST00000295092.3
LRATD1
LRAT domain containing 1
chr5_-_140346596 0.10 ENST00000230990.7
HBEGF
heparin binding EGF like growth factor
chr4_+_74933095 0.09 ENST00000513238.5
PARM1
prostate androgen-regulated mucin-like protein 1
chr7_-_87059639 0.09 ENST00000450689.7
ELAPOR2
endosome-lysosome associated apoptosis and autophagy regulator family member 2
chr12_+_112418928 0.09 ENST00000351677.7
ENST00000639857.1
PTPN11
protein tyrosine phosphatase non-receptor type 11
chr4_-_120066777 0.09 ENST00000296509.11
MAD2L1
mitotic arrest deficient 2 like 1
chr20_-_9838831 0.09 ENST00000378423.5
PAK5
p21 (RAC1) activated kinase 5
chr1_+_46203321 0.08 ENST00000371980.4
LURAP1
leucine rich adaptor protein 1
chr3_+_150408314 0.08 ENST00000361875.7
TSC22D2
TSC22 domain family member 2
chr18_+_65751000 0.08 ENST00000397968.4
CDH7
cadherin 7
chr15_-_48963912 0.08 ENST00000332408.9
SHC4
SHC adaptor protein 4
chr8_+_28494190 0.07 ENST00000537916.2
ENST00000240093.8
ENST00000523546.1
FZD3
frizzled class receptor 3
chr1_+_91500827 0.07 ENST00000234626.11
CDC7
cell division cycle 7
chr21_-_14383125 0.07 ENST00000285667.4
HSPA13
heat shock protein family A (Hsp70) member 13
chr9_+_79571767 0.07 ENST00000376544.7
TLE4
TLE family member 4, transcriptional corepressor
chr9_-_136050502 0.07 ENST00000371753.5
NACC2
NACC family member 2
chr5_-_107670897 0.06 ENST00000333274.11
EFNA5
ephrin A5
chr2_+_158456939 0.06 ENST00000389759.8
ENST00000628904.2
ENST00000389757.7
PKP4
plakophilin 4
chr5_-_147782518 0.06 ENST00000507386.5
JAKMIP2
janus kinase and microtubule interacting protein 2
chr18_+_34978244 0.06 ENST00000436190.6
MAPRE2
microtubule associated protein RP/EB family member 2
chr12_+_74537787 0.06 ENST00000519948.4
ATXN7L3B
ataxin 7 like 3B
chr3_-_64445396 0.05 ENST00000295902.11
PRICKLE2
prickle planar cell polarity protein 2
chr6_+_162727129 0.05 ENST00000337019.7
ENST00000366889.6
PACRG
parkin coregulated
chr14_-_44961889 0.05 ENST00000579157.1
ENST00000396128.9
ENST00000556500.1
KLHL28
kelch like family member 28
chr20_-_47355657 0.05 ENST00000311275.11
ZMYND8
zinc finger MYND-type containing 8
chr4_+_70902326 0.05 ENST00000502869.5
ENST00000309395.7
ENST00000396051.2
MOB1B
MOB kinase activator 1B
chr1_-_70205531 0.05 ENST00000370952.4
LRRC40
leucine rich repeat containing 40
chrX_-_124963768 0.05 ENST00000371130.7
ENST00000422452.2
TENM1
teneurin transmembrane protein 1
chrX_-_77786198 0.05 ENST00000624032.3
ENST00000624668.3
ENST00000373344.11
ENST00000395603.7
ENST00000624166.3
ENST00000623321.3
ENST00000622960.1
ATRX
ATRX chromatin remodeler
chr18_+_11689210 0.05 ENST00000334049.11
GNAL
G protein subunit alpha L
chr11_+_9384621 0.05 ENST00000379719.8
ENST00000527431.1
ENST00000630083.1
IPO7
importin 7
chr1_+_113390495 0.05 ENST00000307546.14
MAGI3
membrane associated guanylate kinase, WW and PDZ domain containing 3
chr2_+_174334947 0.04 ENST00000394967.3
SP9
Sp9 transcription factor
chr17_+_56834081 0.04 ENST00000572810.1
ENST00000284061.8
DGKE
diacylglycerol kinase epsilon
chr11_-_27506751 0.04 ENST00000278193.7
ENST00000524596.1
LIN7C
lin-7 homolog C, crumbs cell polarity complex component
chr15_+_44427591 0.04 ENST00000558791.5
ENST00000260327.9
CTDSPL2
CTD small phosphatase like 2
chr2_+_197453423 0.04 ENST00000263960.6
COQ10B
coenzyme Q10B
chr5_+_139293728 0.04 ENST00000510056.5
ENST00000511249.5
ENST00000394805.8
ENST00000503811.5
ENST00000618441.5
MATR3
matrin 3
chr12_+_22625075 0.04 ENST00000671733.1
ENST00000335148.8
ENST00000672951.1
ENST00000266517.9
ETNK1
ethanolamine kinase 1
chr2_-_27663594 0.04 ENST00000337768.10
ENST00000405491.5
ENST00000464789.2
ENST00000406540.5
SUPT7L
SPT7 like, STAGA complex subunit gamma
chr13_-_77327050 0.04 ENST00000684354.1
ENST00000682321.1
ENST00000683823.1
ENST00000683697.1
ENST00000357337.11
ENST00000544440.7
MYCBP2
MYC binding protein 2
chr18_+_62187247 0.04 ENST00000644646.2
ENST00000256858.10
ENST00000398130.6
RELCH
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
chr17_-_714709 0.04 ENST00000401468.7
ENST00000575100.2
ENST00000680069.1
ENST00000681902.1
ENST00000576019.6
ENST00000571456.2
ENST00000679361.1
ENST00000680241.1
ENST00000681917.1
ENST00000681133.1
ENST00000437048.7
ENST00000680128.1
ENST00000681154.1
ENST00000679961.1
ENST00000680970.1
ENST00000681295.1
ENST00000574029.6
ENST00000681317.1
ENST00000571805.6
ENST00000291074.10
VPS53
VPS53 subunit of GARP complex
chr1_-_39672080 0.04 ENST00000235628.2
NT5C1A
5'-nucleotidase, cytosolic IA
chr7_+_12211259 0.04 ENST00000396668.8
ENST00000444443.5
ENST00000396667.7
TMEM106B
transmembrane protein 106B
chr9_+_75088498 0.04 ENST00000346234.7
OSTF1
osteoclast stimulating factor 1
chr9_+_117704382 0.04 ENST00000646089.1
ENST00000355622.8
ENSG00000285082.2
TLR4
novel protein
toll like receptor 4
chr6_-_13711817 0.03 ENST00000011619.6
RANBP9
RAN binding protein 9
chr12_-_56189548 0.03 ENST00000347471.8
ENST00000267064.8
ENST00000394023.7
SMARCC2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
chr12_-_122526929 0.03 ENST00000331738.12
ENST00000528279.1
ENST00000344591.8
ENST00000526560.6
RSRC2
arginine and serine rich coiled-coil 2
chr18_+_24426633 0.03 ENST00000648078.1
ENST00000284202.9
IMPACT
impact RWD domain protein
chr9_-_6015607 0.03 ENST00000485372.1
ENST00000259569.6
ENST00000623170.1
RANBP6
RAN binding protein 6
chr1_+_111449442 0.03 ENST00000369722.8
ENST00000483994.1
ATP5PB
ATP synthase peripheral stalk-membrane subunit b
chr8_+_131904071 0.03 ENST00000254624.10
ENST00000522709.5
EFR3A
EFR3 homolog A
chr6_-_87702221 0.03 ENST00000257787.6
AKIRIN2
akirin 2
chr12_+_54549586 0.02 ENST00000243052.8
PDE1B
phosphodiesterase 1B
chrX_-_119852948 0.02 ENST00000276201.7
ENST00000345865.6
UPF3B
UPF3B regulator of nonsense mediated mRNA decay
chr1_+_32108035 0.02 ENST00000373625.8
KPNA6
karyopherin subunit alpha 6
chr9_-_83538303 0.02 ENST00000304195.8
ENST00000376438.5
FRMD3
FERM domain containing 3
chr16_-_2214776 0.02 ENST00000333503.8
PGP
phosphoglycolate phosphatase
chr15_+_68277724 0.02 ENST00000306917.5
FEM1B
fem-1 homolog B
chr5_+_114056017 0.02 ENST00000512097.9
KCNN2
potassium calcium-activated channel subfamily N member 2
chr15_-_56465130 0.02 ENST00000260453.4
MNS1
meiosis specific nuclear structural 1
chr12_+_130872037 0.02 ENST00000448750.7
ENST00000541630.5
ENST00000543796.6
ENST00000392369.6
ENST00000535090.5
ENST00000541679.7
ENST00000392367.4
RAN
RAN, member RAS oncogene family
chr3_-_185552554 0.02 ENST00000424591.6
ENST00000296252.9
LIPH
lipase H
chr18_-_67516707 0.02 ENST00000310045.9
DSEL
dermatan sulfate epimerase like
chr7_-_99144053 0.02 ENST00000361125.1
ENST00000361368.7
SMURF1
SMAD specific E3 ubiquitin protein ligase 1
chr1_-_205813177 0.02 ENST00000367137.4
SLC41A1
solute carrier family 41 member 1
chr15_-_34101807 0.02 ENST00000527822.5
ENST00000528949.1
ENST00000256545.9
EMC7
ER membrane protein complex subunit 7
chr9_+_88388356 0.02 ENST00000375859.4
SPIN1
spindlin 1
chr10_+_110207587 0.02 ENST00000332674.9
ENST00000453116.5
MXI1
MAX interactor 1, dimerization protein
chr9_-_132944600 0.02 ENST00000490179.3
ENST00000643583.1
ENST00000298552.9
ENST00000643072.1
ENST00000642745.1
ENST00000647462.1
ENST00000643875.1
ENST00000642627.1
ENST00000475903.6
ENST00000642617.1
ENST00000642646.1
ENST00000646625.1
ENST00000645150.1
ENST00000645129.1
ENST00000403810.6
ENST00000643691.1
ENST00000644097.1
TSC1
TSC complex subunit 1
chr8_-_77000070 0.02 ENST00000357039.9
PEX2
peroxisomal biogenesis factor 2
chr5_-_131796921 0.02 ENST00000307968.11
ENST00000307954.12
FNIP1
folliculin interacting protein 1
chr18_+_9913979 0.01 ENST00000400000.7
ENST00000340541.4
VAPA
VAMP associated protein A
chrX_+_123859976 0.01 ENST00000371199.8
XIAP
X-linked inhibitor of apoptosis
chr8_+_55102012 0.01 ENST00000327381.7
XKR4
XK related 4
chr5_+_134845935 0.01 ENST00000394976.4
C5orf24
chromosome 5 open reading frame 24
chr15_+_58987652 0.01 ENST00000348370.9
ENST00000559160.1
RNF111
ring finger protein 111
chr3_+_121593363 0.01 ENST00000338040.6
FBXO40
F-box protein 40
chr3_+_58306236 0.01 ENST00000295959.10
ENST00000445193.7
ENST00000466547.1
ENST00000475412.5
ENST00000474660.5
ENST00000477305.5
ENST00000481972.5
RPP14
HTD2
ribonuclease P/MRP subunit p14
hydroxyacyl-thioester dehydratase type 2
chr18_+_46946821 0.01 ENST00000245121.9
ENST00000356157.12
KATNAL2
katanin catalytic subunit A1 like 2
chr3_+_53494591 0.01 ENST00000288139.11
ENST00000350061.11
ENST00000636938.1
CACNA1D
calcium voltage-gated channel subunit alpha1 D
chr1_-_243850070 0.00 ENST00000366539.6
ENST00000672578.1
AKT3
AKT serine/threonine kinase 3
chr5_-_116574802 0.00 ENST00000343348.11
SEMA6A
semaphorin 6A
chr11_-_107018462 0.00 ENST00000526355.7
GUCY1A2
guanylate cyclase 1 soluble subunit alpha 2
chr20_+_48921701 0.00 ENST00000371917.5
ARFGEF2
ADP ribosylation factor guanine nucleotide exchange factor 2
chr14_-_34462223 0.00 ENST00000298130.5
SPTSSA
serine palmitoyltransferase small subunit A
chr2_-_222298740 0.00 ENST00000409828.7
ENST00000350526.9
PAX3
paired box 3

Network of associatons between targets according to the STRING database.

First level regulatory network of UGACAUC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:1990926 short-term synaptic potentiation(GO:1990926)
0.1 0.3 GO:1990709 presynaptic active zone organization(GO:1990709)
0.1 0.3 GO:0098884 postsynaptic neurotransmitter receptor internalization(GO:0098884)
0.0 0.6 GO:0016191 synaptic vesicle uncoating(GO:0016191)
0.0 0.1 GO:1901383 negative regulation of chorionic trophoblast cell proliferation(GO:1901383)
0.0 0.2 GO:0030070 insulin processing(GO:0030070)
0.0 0.1 GO:2000639 regulation of SREBP signaling pathway(GO:2000638) negative regulation of SREBP signaling pathway(GO:2000639)
0.0 0.1 GO:0051463 negative regulation of cortisol secretion(GO:0051463)
0.0 0.2 GO:0015015 heparan sulfate proteoglycan biosynthetic process, enzymatic modification(GO:0015015)
0.0 0.1 GO:0021965 spinal cord ventral commissure morphogenesis(GO:0021965)
0.0 0.3 GO:0018095 protein polyglutamylation(GO:0018095)
0.0 0.3 GO:0035881 amacrine cell differentiation(GO:0035881)
0.0 0.4 GO:0048172 regulation of short-term neuronal synaptic plasticity(GO:0048172)
0.0 0.2 GO:0009048 dosage compensation(GO:0007549) dosage compensation by inactivation of X chromosome(GO:0009048)
0.0 0.3 GO:0008627 intrinsic apoptotic signaling pathway in response to osmotic stress(GO:0008627)
0.0 0.0 GO:0034183 negative regulation of maintenance of sister chromatid cohesion(GO:0034092) negative regulation of maintenance of mitotic sister chromatid cohesion(GO:0034183) maintenance of mitotic sister chromatid cohesion, telomeric(GO:0099403) mitotic sister chromatid cohesion, telomeric(GO:0099404) regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904907) negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904908)
0.0 0.1 GO:1904693 midbrain morphogenesis(GO:1904693)
0.0 0.2 GO:0003322 pancreatic A cell development(GO:0003322)
0.0 0.1 GO:0051415 interphase microtubule nucleation by interphase microtubule organizing center(GO:0051415) microtubule nucleation by microtubule organizing center(GO:0051418)
0.0 0.1 GO:0051541 elastin metabolic process(GO:0051541)
0.0 0.0 GO:0032707 negative regulation of interleukin-23 production(GO:0032707)
0.0 0.4 GO:0060732 positive regulation of inositol phosphate biosynthetic process(GO:0060732)
0.0 0.3 GO:0045162 clustering of voltage-gated sodium channels(GO:0045162)
0.0 0.0 GO:0060733 regulation of eIF2 alpha phosphorylation by amino acid starvation(GO:0060733) regulation of translational initiation in response to starvation(GO:0071262) positive regulation of translational initiation in response to starvation(GO:0071264)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0098844 postsynaptic endocytic zone membrane(GO:0098844)
0.1 0.4 GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex(GO:0070032)
0.0 0.3 GO:0060200 clathrin-sculpted acetylcholine transport vesicle(GO:0060200) clathrin-sculpted acetylcholine transport vesicle membrane(GO:0060201)
0.0 0.1 GO:0008275 gamma-tubulin small complex(GO:0008275)
0.0 0.1 GO:0048179 activin receptor complex(GO:0048179)
0.0 0.1 GO:1990452 Parkin-FBXW7-Cul1 ubiquitin ligase complex(GO:1990452)
0.0 0.9 GO:0032281 AMPA glutamate receptor complex(GO:0032281)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798)
0.1 0.4 GO:0004999 vasoactive intestinal polypeptide receptor activity(GO:0004999)
0.0 0.2 GO:0005294 neutral L-amino acid secondary active transmembrane transporter activity(GO:0005294)
0.0 0.2 GO:0017095 heparan sulfate 6-O-sulfotransferase activity(GO:0017095)
0.0 0.1 GO:0038100 nodal binding(GO:0038100)
0.0 0.3 GO:0070740 tubulin-glutamic acid ligase activity(GO:0070740)
0.0 0.1 GO:0005042 netrin receptor activity(GO:0005042)
0.0 0.1 GO:0050816 phosphothreonine binding(GO:0050816)
0.0 0.0 GO:0015616 DNA translocase activity(GO:0015616)
0.0 0.1 GO:0005169 neurotrophin TRKB receptor binding(GO:0005169)
0.0 0.5 GO:0031489 myosin V binding(GO:0031489)
0.0 0.2 GO:0004971 AMPA glutamate receptor activity(GO:0004971)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.7 REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle
0.0 0.6 REACTOME LYSOSOME VESICLE BIOGENESIS Genes involved in Lysosome Vesicle Biogenesis