Illumina Body Map 2 (GSE30611)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ZNF219 | hg38_v1_chr14_-_21098848_21099014 | -0.51 | 2.9e-03 | Click! |
ZNF740 | hg38_v1_chr12_+_53180679_53180755 | 0.38 | 3.4e-02 | Click! |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 19.6 | GO:0006333 | chromatin assembly or disassembly(GO:0006333) |
0.1 | 8.5 | GO:0006369 | termination of RNA polymerase II transcription(GO:0006369) |
0.6 | 7.9 | GO:0072553 | terminal button organization(GO:0072553) |
0.1 | 7.4 | GO:0070534 | protein K63-linked ubiquitination(GO:0070534) |
0.7 | 6.3 | GO:0048295 | positive regulation of isotype switching to IgE isotypes(GO:0048295) |
0.1 | 5.9 | GO:0051568 | histone H3-K4 methylation(GO:0051568) |
0.0 | 5.9 | GO:2000134 | negative regulation of G1/S transition of mitotic cell cycle(GO:2000134) |
0.3 | 5.1 | GO:0043983 | histone H4-K12 acetylation(GO:0043983) |
0.4 | 5.0 | GO:0007256 | activation of JNKK activity(GO:0007256) |
0.3 | 4.7 | GO:0040032 | post-embryonic body morphogenesis(GO:0040032) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 79.3 | GO:0005654 | nucleoplasm(GO:0005654) |
0.3 | 13.3 | GO:0090545 | NuRD complex(GO:0016581) CHD-type complex(GO:0090545) |
0.1 | 12.5 | GO:0017053 | transcriptional repressor complex(GO:0017053) |
0.0 | 11.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
0.1 | 7.8 | GO:0005844 | polysome(GO:0005844) |
0.3 | 7.4 | GO:0048188 | Set1C/COMPASS complex(GO:0048188) |
0.3 | 6.9 | GO:0000812 | Swr1 complex(GO:0000812) |
0.2 | 5.2 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.1 | 5.0 | GO:0031519 | PcG protein complex(GO:0031519) |
0.1 | 4.7 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 23.5 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) |
0.1 | 17.2 | GO:0003713 | transcription coactivator activity(GO:0003713) |
0.2 | 15.1 | GO:0004003 | ATP-dependent DNA helicase activity(GO:0004003) |
0.1 | 14.8 | GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding(GO:0000979) |
0.1 | 10.3 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
0.8 | 10.0 | GO:0008420 | CTD phosphatase activity(GO:0008420) |
0.1 | 9.0 | GO:0061631 | ubiquitin conjugating enzyme activity(GO:0061631) ubiquitin-like protein conjugating enzyme activity(GO:0061650) |
0.0 | 8.3 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.2 | 7.9 | GO:0008266 | poly(U) RNA binding(GO:0008266) |
0.3 | 7.8 | GO:0001222 | transcription corepressor binding(GO:0001222) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 25.4 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
0.1 | 14.7 | PID RB 1PATHWAY | Regulation of retinoblastoma protein |
0.3 | 13.1 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.1 | 7.8 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
0.1 | 7.1 | ST JNK MAPK PATHWAY | JNK MAPK Pathway |
0.1 | 5.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.1 | 5.1 | PID PLK1 PATHWAY | PLK1 signaling events |
0.1 | 4.9 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.1 | 4.8 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 4.6 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 13.3 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 7.9 | REACTOME NUCLEAR EVENTS KINASE AND TRANSCRIPTION FACTOR ACTIVATION | Genes involved in Nuclear Events (kinase and transcription factor activation) |
0.1 | 6.9 | REACTOME SMAD2 SMAD3 SMAD4 HETEROTRIMER REGULATES TRANSCRIPTION | Genes involved in SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription |
0.1 | 6.7 | REACTOME CIRCADIAN REPRESSION OF EXPRESSION BY REV ERBA | Genes involved in Circadian Repression of Expression by REV-ERBA |
0.1 | 5.4 | REACTOME G1 PHASE | Genes involved in G1 Phase |
0.1 | 4.6 | REACTOME SHC1 EVENTS IN ERBB4 SIGNALING | Genes involved in SHC1 events in ERBB4 signaling |
0.2 | 4.3 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |
0.0 | 4.1 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 4.0 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.1 | 3.7 | REACTOME PROSTACYCLIN SIGNALLING THROUGH PROSTACYCLIN RECEPTOR | Genes involved in Prostacyclin signalling through prostacyclin receptor |