avrg: Illumina Body Map 2 (GSE30611)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Name	miRBASE accession
hsa-miR-139-5p Links miRBase	MIMAT0000250

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Promoter	Score	Transcript	Gene	Gene Info
chr16_+_58463663 Show fit	0.29	ENST00000258187.9	NDRG4 Links Ensembl NCBI GeneCards UniProt Show fit	NDRG family member 4
chr12_+_20368495 Show fit	0.16	ENST00000359062.4	PDE3A Links Ensembl NCBI GeneCards UniProt Show fit	phosphodiesterase 3A
chrX_-_33128360 Show fit	0.15	ENST00000378677.6	DMD Links Ensembl NCBI GeneCards UniProt Show fit	dystrophin
chr19_+_10420474 Show fit	0.13	ENST00000380702.7	PDE4A Links Ensembl NCBI GeneCards UniProt Show fit	phosphodiesterase 4A
chr17_+_29390326 Show fit	0.13	ENST00000261716.8	TAOK1 Links Ensembl NCBI GeneCards UniProt Show fit	TAO kinase 1
chr2_+_169827432 Show fit	0.12	ENST00000272793.11	UBR3 Links Ensembl NCBI GeneCards UniProt Show fit	ubiquitin protein ligase E3 component n-recognin 3
chrX_-_77786198 Show fit	0.11	ENST00000624032.3 ENST00000624668.3 ENST00000373344.11 ENST00000395603.7 ENST00000624166.3 ENST00000623321.3 ENST00000622960.1	ATRX Links Ensembl NCBI GeneCards UniProt Show fit	ATRX chromatin remodeler
chr5_-_137499293 Show fit	0.10	ENST00000510689.5 ENST00000394945.6	SPOCK1 Links Ensembl NCBI GeneCards UniProt Show fit	SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1
chr7_-_139777986 Show fit	0.09	ENST00000406875.8	HIPK2 Links Ensembl NCBI GeneCards UniProt Show fit	homeodomain interacting protein kinase 2
chr4_-_113761927 Show fit	0.09	ENST00000296402.9	CAMK2D Links Ensembl NCBI GeneCards UniProt Show fit	calcium/calmodulin dependent protein kinase II delta
chr15_-_79090760 Show fit	0.08	ENST00000419573.7 ENST00000558480.7	RASGRF1 Links Ensembl NCBI GeneCards UniProt Show fit	Ras protein specific guanine nucleotide releasing factor 1
chr3_-_160565560 Show fit	0.08	ENST00000334256.9 ENST00000676866.1 ENST00000469804.1	KPNA4 Links Ensembl NCBI GeneCards UniProt Show fit	karyopherin subunit alpha 4
chr9_-_98708856 Show fit	0.08	ENST00000259455.4	GABBR2 Links Ensembl NCBI GeneCards UniProt Show fit	gamma-aminobutyric acid type B receptor subunit 2
chr3_+_159839847 Show fit	0.08	ENST00000445224.6	SCHIP1 Links Ensembl NCBI GeneCards UniProt Show fit	schwannomin interacting protein 1
chr11_-_128522264 Show fit	0.08	ENST00000531611.5	ETS1 Links Ensembl NCBI GeneCards UniProt Show fit	ETS proto-oncogene 1, transcription factor
chr2_-_69643703 Show fit	0.07	ENST00000406297.7 ENST00000409085.9	AAK1 Links Ensembl NCBI GeneCards UniProt Show fit	AP2 associated kinase 1
chr7_-_76358982 Show fit	0.07	ENST00000307630.5	YWHAG Links Ensembl NCBI GeneCards UniProt Show fit	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma
chr15_+_39581068 Show fit	0.07	ENST00000397591.2 ENST00000260356.6	THBS1 Links Ensembl NCBI GeneCards UniProt Show fit	thrombospondin 1
chr17_-_80476597 Show fit	0.07	ENST00000306773.5	NPTX1 Links Ensembl NCBI GeneCards UniProt Show fit	neuronal pentraxin 1
chr5_-_128538230 Show fit	0.07	ENST00000262464.9	FBN2 Links Ensembl NCBI GeneCards UniProt Show fit	fibrillin 2
chr1_-_175743529 Show fit	0.06	ENST00000367674.7 ENST00000263525.6	TNR Links Ensembl NCBI GeneCards UniProt Show fit	tenascin R
chrX_-_25015924 Show fit	0.06	ENST00000379044.5	ARX Links Ensembl NCBI GeneCards UniProt Show fit	aristaless related homeobox
chr2_+_26848093 Show fit	0.06	ENST00000288699.11	DPYSL5 Links Ensembl NCBI GeneCards UniProt Show fit	dihydropyrimidinase like 5
chr5_-_45696326 Show fit	0.06	ENST00000673735.1 ENST00000303230.6	HCN1 Links Ensembl NCBI GeneCards UniProt Show fit	hyperpolarization activated cyclic nucleotide gated potassium channel 1
chrX_+_37571569 Show fit	0.05	ENST00000614025.4 ENST00000378621.7 ENST00000378619.4	LANCL3 Links Ensembl NCBI GeneCards UniProt Show fit	LanC like 3
chr5_-_132737518 Show fit	0.05	ENST00000403231.6 ENST00000378735.5 ENST00000618515.4 ENST00000378746.8	KIF3A Links Ensembl NCBI GeneCards UniProt Show fit	kinesin family member 3A
chr5_-_59893718 Show fit	0.05	ENST00000340635.11	PDE4D Links Ensembl NCBI GeneCards UniProt Show fit	phosphodiesterase 4D
chr2_-_144517506 Show fit	0.05	ENST00000431672.4 ENST00000558170.6	ZEB2 Links Ensembl NCBI GeneCards UniProt Show fit	zinc finger E-box binding homeobox 2
chr9_+_126860625 Show fit	0.05	ENST00000319119.4	ZBTB34 Links Ensembl NCBI GeneCards UniProt Show fit	zinc finger and BTB domain containing 34
chr2_+_112275588 Show fit	0.05	ENST00000409871.6 ENST00000343936.4	ZC3H6 Links Ensembl NCBI GeneCards UniProt Show fit	zinc finger CCCH-type containing 6
chr5_+_149730260 Show fit	0.05	ENST00000360453.8 ENST00000394320.7 ENST00000309241.10	PPARGC1B Links Ensembl NCBI GeneCards UniProt Show fit	PPARG coactivator 1 beta
chr18_+_57352541 Show fit	0.05	ENST00000324000.4	ST8SIA3 Links Ensembl NCBI GeneCards UniProt Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
chr18_+_61333424 Show fit	0.05	ENST00000262717.9	CDH20 Links Ensembl NCBI GeneCards UniProt Show fit	cadherin 20
chr4_+_113049616 Show fit	0.05	ENST00000504454.5 ENST00000357077.9 ENST00000394537.7 ENST00000672779.1 ENST00000264366.10	ANK2 Links Ensembl NCBI GeneCards UniProt Show fit	ankyrin 2
chr2_+_190408324 Show fit	0.05	ENST00000417958.5 ENST00000432036.5 ENST00000392328.6	MFSD6 Links Ensembl NCBI GeneCards UniProt Show fit	major facilitator superfamily domain containing 6
chr3_-_116445458 Show fit	0.04	ENST00000490035.7	LSAMP Links Ensembl NCBI GeneCards UniProt Show fit	limbic system associated membrane protein
chr5_-_134226059 Show fit	0.04	ENST00000519718.1 ENST00000481195.6	ENSG00000272772.1 Links Ensembl NCBI GeneCards UniProt Show fit PPP2CA Links Ensembl NCBI GeneCards UniProt Show fit	novel protein protein phosphatase 2 catalytic subunit alpha
chr8_-_104588998 Show fit	0.04	ENST00000424843.6	LRP12 Links Ensembl NCBI GeneCards UniProt Show fit	LDL receptor related protein 12
chr8_-_66613208 Show fit	0.04	ENST00000522677.8	MYBL1 Links Ensembl NCBI GeneCards UniProt Show fit	MYB proto-oncogene like 1
chr1_+_113929600 Show fit	0.04	ENST00000369558.5 ENST00000369561.8	HIPK1 Links Ensembl NCBI GeneCards UniProt Show fit	homeodomain interacting protein kinase 1
chr5_-_147782518 Show fit	0.04	ENST00000507386.5	JAKMIP2 Links Ensembl NCBI GeneCards UniProt Show fit	janus kinase and microtubule interacting protein 2
chrX_-_74614612 Show fit	0.04	ENST00000349225.2 ENST00000332687.11	RLIM Links Ensembl NCBI GeneCards UniProt Show fit	ring finger protein, LIM domain interacting
chr5_+_144205250 Show fit	0.04	ENST00000507359.3	KCTD16 Links Ensembl NCBI GeneCards UniProt Show fit	potassium channel tetramerization domain containing 16
chr18_+_52340179 Show fit	0.04	ENST00000442544.7	DCC Links Ensembl NCBI GeneCards UniProt Show fit	DCC netrin 1 receptor
chr9_+_74497308 Show fit	0.03	ENST00000376896.8	RORB Links Ensembl NCBI GeneCards UniProt Show fit	RAR related orphan receptor B
chr13_+_112067143 Show fit	0.03	ENST00000330949.3	SOX1 Links Ensembl NCBI GeneCards UniProt Show fit	SRY-box transcription factor 1
chr1_-_72282457 Show fit	0.03	ENST00000357731.10	NEGR1 Links Ensembl NCBI GeneCards UniProt Show fit	neuronal growth regulator 1
chr3_-_125055987 Show fit	0.03	ENST00000311127.9	HEG1 Links Ensembl NCBI GeneCards UniProt Show fit	heart development protein with EGF like domains 1
chr19_+_1249870 Show fit	0.03	ENST00000591446.6	MIDN Links Ensembl NCBI GeneCards UniProt Show fit	midnolin
chr1_-_55215345 Show fit	0.03	ENST00000294383.7	USP24 Links Ensembl NCBI GeneCards UniProt Show fit	ubiquitin specific peptidase 24
chr8_-_42051978 Show fit	0.02	ENST00000265713.8 ENST00000648335.1 ENST00000485568.5 ENST00000426524.6 ENST00000396930.4 ENST00000406337.6	KAT6A Links Ensembl NCBI GeneCards UniProt Show fit	lysine acetyltransferase 6A
chr1_+_162497805 Show fit	0.02	ENST00000538489.5 ENST00000489294.2	UHMK1 Links Ensembl NCBI GeneCards UniProt Show fit	U2AF homology motif kinase 1
chr2_+_237966955 Show fit	0.02	ENST00000414443.5 ENST00000448502.5 ENST00000416292.5 ENST00000409633.5 ENST00000272930.9 ENST00000409953.5 ENST00000409332.5	UBE2F Links Ensembl NCBI GeneCards UniProt Show fit	ubiquitin conjugating enzyme E2 F (putative)
chr16_-_705726 Show fit	0.02	ENST00000397621.6 ENST00000324361.9	FBXL16 Links Ensembl NCBI GeneCards UniProt Show fit	F-box and leucine rich repeat protein 16
chr6_+_37819680 Show fit	0.02	ENST00000287218.9 ENST00000373391.6	ZFAND3 Links Ensembl NCBI GeneCards UniProt Show fit	zinc finger AN1-type containing 3
chr6_-_16761447 Show fit	0.02	ENST00000244769.8 ENST00000436367.6	ATXN1 Links Ensembl NCBI GeneCards UniProt Show fit	ataxin 1
chr13_-_76886397 Show fit	0.02	ENST00000377474.4	KCTD12 Links Ensembl NCBI GeneCards UniProt Show fit	potassium channel tetramerization domain containing 12
chr1_-_155562693 Show fit	0.02	ENST00000368346.7 ENST00000392403.8 ENST00000679333.1 ENST00000679133.1	ASH1L Links Ensembl NCBI GeneCards UniProt Show fit	ASH1 like histone lysine methyltransferase
chr3_-_129688691 Show fit	0.02	ENST00000432054.6	TMCC1 Links Ensembl NCBI GeneCards UniProt Show fit	transmembrane and coiled-coil domain family 1
chr20_+_63895114 Show fit	0.02	ENST00000360864.9	DNAJC5 Links Ensembl NCBI GeneCards UniProt Show fit	DnaJ heat shock protein family (Hsp40) member C5
chr21_-_34888683 Show fit	0.02	ENST00000344691.8 ENST00000358356.9	RUNX1 Links Ensembl NCBI GeneCards UniProt Show fit	RUNX family transcription factor 1
chr17_+_66302606 Show fit	0.02	ENST00000413366.8	PRKCA Links Ensembl NCBI GeneCards UniProt Show fit	protein kinase C alpha
chr1_-_217089627 Show fit	0.02	ENST00000361525.7	ESRRG Links Ensembl NCBI GeneCards UniProt Show fit	estrogen related receptor gamma
chr18_-_55588184 Show fit	0.02	ENST00000354452.8 ENST00000565908.6 ENST00000635822.2	TCF4 Links Ensembl NCBI GeneCards UniProt Show fit	transcription factor 4
chr1_-_21345475 Show fit	0.01	ENST00000415912.6	ECE1 Links Ensembl NCBI GeneCards UniProt Show fit	endothelin converting enzyme 1
chr10_-_931684 Show fit	0.01	ENST00000316157.8	LARP4B Links Ensembl NCBI GeneCards UniProt Show fit	La ribonucleoprotein 4B
chr8_+_60678705 Show fit	0.01	ENST00000423902.7	CHD7 Links Ensembl NCBI GeneCards UniProt Show fit	chromodomain helicase DNA binding protein 7
chr2_-_207166818 Show fit	0.01	ENST00000423015.5	KLF7 Links Ensembl NCBI GeneCards UniProt Show fit	Kruppel like factor 7
chr4_-_24584517 Show fit	0.01	ENST00000336812.5	DHX15 Links Ensembl NCBI GeneCards UniProt Show fit	DEAH-box helicase 15
chr17_+_58083407 Show fit	0.01	ENST00000579991.3	DYNLL2 Links Ensembl NCBI GeneCards UniProt Show fit	dynein light chain LC8-type 2
chr1_+_29236544 Show fit	0.01	ENST00000428026.6 ENST00000460170.2	PTPRU Links Ensembl NCBI GeneCards UniProt Show fit	protein tyrosine phosphatase receptor type U
chr13_-_98577131 Show fit	0.01	ENST00000397517.6	STK24 Links Ensembl NCBI GeneCards UniProt Show fit	serine/threonine kinase 24
chrX_+_41334154 Show fit	0.01	ENST00000441189.4 ENST00000644513.1 ENST00000644109.1 ENST00000646122.1 ENST00000644074.1 ENST00000644876.2 ENST00000399959.7 ENST00000646319.1	DDX3X Links Ensembl NCBI GeneCards UniProt Show fit	DEAD-box helicase 3 X-linked
chr1_-_156751654 Show fit	0.01	ENST00000357325.10	HDGF Links Ensembl NCBI GeneCards UniProt Show fit	heparin binding growth factor
chr2_+_119759875 Show fit	0.01	ENST00000263708.7	PTPN4 Links Ensembl NCBI GeneCards UniProt Show fit	protein tyrosine phosphatase non-receptor type 4
chr5_+_72816643 Show fit	0.01	ENST00000337273.10 ENST00000523768.5	TNPO1 Links Ensembl NCBI GeneCards UniProt Show fit	transportin 1
chr8_-_70403786 Show fit	0.01	ENST00000452400.7	NCOA2 Links Ensembl NCBI GeneCards UniProt Show fit	nuclear receptor coactivator 2
chr2_+_176099787 Show fit	0.01	ENST00000406506.4 ENST00000404162.2	HOXD12 Links Ensembl NCBI GeneCards UniProt Show fit	homeobox D12
chr1_-_41918858 Show fit	0.01	ENST00000372583.6	HIVEP3 Links Ensembl NCBI GeneCards UniProt Show fit	HIVEP zinc finger 3
chr3_-_69052309 Show fit	0.01	ENST00000398559.7 ENST00000646708.1 ENST00000646304.1	TMF1 Links Ensembl NCBI GeneCards UniProt Show fit	TATA element modulatory factor 1
chr18_-_5895955 Show fit	0.01	ENST00000581347.2	TMEM200C Links Ensembl NCBI GeneCards UniProt Show fit	transmembrane protein 200C
chr21_-_41879294 Show fit	0.01	ENST00000398548.6 ENST00000422911.6 ENST00000269844.5	PRDM15 Links Ensembl NCBI GeneCards UniProt Show fit	PR/SET domain 15
chr15_+_44427591 Show fit	0.01	ENST00000558791.5 ENST00000260327.9	CTDSPL2 Links Ensembl NCBI GeneCards UniProt Show fit	CTD small phosphatase like 2
chr16_-_58629816 Show fit	0.01	ENST00000564557.1 ENST00000317147.10 ENST00000569240.5 ENST00000441024.6	CNOT1 Links Ensembl NCBI GeneCards UniProt Show fit	CCR4-NOT transcription complex subunit 1
chr1_-_70354673 Show fit	0.01	ENST00000370944.9 ENST00000262346.6	ANKRD13C Links Ensembl NCBI GeneCards UniProt Show fit	ankyrin repeat domain 13C
chr10_-_74150781 Show fit	0.01	ENST00000355264.9 ENST00000372745.1	AP3M1 Links Ensembl NCBI GeneCards UniProt Show fit	adaptor related protein complex 3 subunit mu 1
chr2_+_159712457 Show fit	0.01	ENST00000539065.5 ENST00000259050.8 ENST00000409175.6 ENST00000421037.1	MARCHF7 Links Ensembl NCBI GeneCards UniProt Show fit	membrane associated ring-CH-type finger 7
chr10_+_96832252 Show fit	0.00	ENST00000676187.1 ENST00000675687.1 ENST00000676123.1 ENST00000675471.1 ENST00000371103.8 ENST00000421806.4 ENST00000675250.1 ENST00000540664.6 ENST00000676414.1	LCOR Links Ensembl NCBI GeneCards UniProt Show fit	ligand dependent nuclear receptor corepressor
chr12_+_122752814 Show fit	0.00	ENST00000455982.2 ENST00000280557.11	DENR Links Ensembl NCBI GeneCards UniProt Show fit	density regulated re-initiation and release factor
chr1_+_4654601 Show fit	0.00	ENST00000378191.5	AJAP1 Links Ensembl NCBI GeneCards UniProt Show fit	adherens junctions associated protein 1
chr1_-_1891056 Show fit	0.00	ENST00000378609.9 ENST00000610897.4 ENST00000615252.4	GNB1 Links Ensembl NCBI GeneCards UniProt Show fit	G protein subunit beta 1
chr11_-_95924067 Show fit	0.00	ENST00000676027.1 ENST00000675489.1 ENST00000409459.5 ENST00000676261.1 ENST00000352297.11 ENST00000346299.10 ENST00000676272.1 ENST00000393223.8 ENST00000675022.1 ENST00000675362.1 ENST00000675174.1 ENST00000674989.1 ENST00000675848.1 ENST00000675652.1 ENST00000481642.6	MTMR2 Links Ensembl NCBI GeneCards UniProt Show fit	myotubularin related protein 2
chr5_-_115625972 Show fit	0.00	ENST00000333314.3 ENST00000456936.4	TMED7-TICAM2 Links Ensembl NCBI GeneCards UniProt Show fit TMED7 Links Ensembl NCBI GeneCards UniProt Show fit	TMED7-TICAM2 readthrough transmembrane p24 trafficking protein 7
chr5_-_115262851 Show fit	0.00	ENST00000379615.3 ENST00000419445.6	PGGT1B Links Ensembl NCBI GeneCards UniProt Show fit	protein geranylgeranyltransferase type I subunit beta
chr10_-_689613 Show fit	0.00	ENST00000280886.12 ENST00000634311.1	DIP2C Links Ensembl NCBI GeneCards UniProt Show fit	disco interacting protein 2 homolog C
chr15_-_34988225 Show fit	0.00	ENST00000559564.1 ENST00000356321.4	ZNF770 Links Ensembl NCBI GeneCards UniProt Show fit	zinc finger protein 770
chr1_-_84690406 Show fit	0.00	ENST00000605755.5 ENST00000342203.8 ENST00000437941.6	SSX2IP Links Ensembl NCBI GeneCards UniProt Show fit	SSX family member 2 interacting protein

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0034183	negative regulation of maintenance of sister chromatid cohesion(GO:0034092) negative regulation of maintenance of mitotic sister chromatid cohesion(GO:0034183) maintenance of mitotic sister chromatid cohesion, telomeric(GO:0099403) mitotic sister chromatid cohesion, telomeric(GO:0099404) regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904907) negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric(GO:1904908)
0.0	0.1	GO:0002581	negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II(GO:0002581)
0.0	0.1	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway(GO:0071596)
0.0	0.2	GO:0060282	positive regulation of oocyte development(GO:0060282)
0.0	0.2	GO:0030578	PML body organization(GO:0030578)
0.0	0.1	GO:0048686	regulation of sprouting of injured axon(GO:0048686) regulation of axon extension involved in regeneration(GO:0048690)
0.0	0.3	GO:2001135	regulation of endocytic recycling(GO:2001135)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031933	telomeric heterochromatin(GO:0031933)
0.0	0.1	GO:0016939	kinesin II complex(GO:0016939)
0.0	0.1	GO:0038039	G-protein coupled receptor heterodimeric complex(GO:0038039)
0.0	0.1	GO:0098855	HCN channel complex(GO:0098855)
0.0	0.1	GO:0072534	perineuronal net(GO:0072534)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0004119	cGMP-inhibited cyclic-nucleotide phosphodiesterase activity(GO:0004119)
0.0	0.1	GO:0015616	DNA translocase activity(GO:0015616)
0.0	0.1	GO:0008426	protein kinase C inhibitor activity(GO:0008426)
0.0	0.1	GO:0070051	fibrinogen binding(GO:0070051) collagen V binding(GO:0070052)
0.0	0.1	GO:0004965	G-protein coupled GABA receptor activity(GO:0004965)