hg38_v1_chr11_+_124919244_124919244	2.01439	BRCA1	ENST00000408930.6|HEPN1|ENSG00000221932.6|hepatocellular carcinoma, down-regulated 1
hg38_v1_chr14_-_59630806_59630820	1.78329	BRCA1	ENST00000342503.8|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr1_+_159171607_159171759	1.66274	BRCA1	ENST00000368124.8|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000368125.9|CADM3|ENSG00000162706.13|cell adhesion molecule 3	ENST00000416746.1|CADM3|ENSG00000162706.13|cell adhesion molecule 3
hg38_v1_chr14_-_59630582_59630685	1.63362	BRCA1	ENST00000395090.5|RTN1|ENSG00000139970.17|reticulon 1
hg38_v1_chr2_-_157325808_157325905	1.44635	BRCA1	ENST00000410096.6|ERMN|ENSG00000136541.15|ermin	ENST00000420719.6|ERMN|ENSG00000136541.15|ermin	ENST00000409216.5|ERMN|ENSG00000136541.15|ermin	ENST00000419116.2|ERMN|ENSG00000136541.15|ermin
hg38_v1_chr2_-_49974083_49974123	1.06113	BRCA1	ENST00000636345.1|NRXN1|ENSG00000179915.24|neurexin 1
hg38_v1_chr6_+_12717660_12717671	0.921277	BRCA1	ENST00000674637.1|PHACTR1|ENSG00000112137.18|phosphatase and actin regulator 1
hg38_v1_chr19_+_45467988_45468007	0.793526	BRCA1	ENST00000615753.4|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000585836.5|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000417353.6|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000591858.5|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000443841.6|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000590335.1|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit	ENST00000353609.8|FOSB|ENSG00000125740.14|FosB proto-oncogene, AP-1 transcription factor subunit
hg38_v1_chr13_-_49444004_49444076	0.750778	BRCA1	ENST00000410043.5|CAB39L|ENSG00000102547.19|calcium binding protein 39 like	ENST00000409308.6|CAB39L|ENSG00000102547.19|calcium binding protein 39 like
hg38_v1_chr4_+_625555_625617	0.714051	BRCA1	ENST00000496514.6|PDE6B|ENSG00000133256.13|phosphodiesterase 6B	ENST00000255622.10|PDE6B|ENSG00000133256.13|phosphodiesterase 6B
hg38_v1_chr1_+_84181630_84181667	0.703681	BRCA1	ENST00000610457.1|PRKACB|ENSG00000142875.19|protein kinase cAMP-activated catalytic subunit beta
hg38_v1_chr10_-_24706622_24706653	0.683793	BRCA1	ENST00000680286.1|ARHGAP21|ENSG00000107863.19|Rho GTPase activating protein 21
hg38_v1_chr2_-_157325659_157325672	0.673102	BRCA1	ENST00000409925.1|ERMN|ENSG00000136541.15|ermin
hg38_v1_chr10_-_114632011_114632092	0.644933	BRCA1	ENST00000651023.1|ABLIM1|ENSG00000099204.20|actin binding LIM protein 1
hg38_v1_chr3_-_127736329_127736380	0.593109	BRCA1	ENST00000398101.7|MGLL|ENSG00000074416.15|monoglyceride lipase
hg38_v1_chr10_+_120851341_120851413	0.559007	BRCA1	ENST00000263461.11|WDR11|ENSG00000120008.16|WD repeat domain 11
hg38_v1_chr14_+_31561376_31561455	0.536585	BRCA1	ENST00000550649.5|NUBPL|ENSG00000151413.17|nucleotide binding protein like	ENST00000281081.12|NUBPL|ENSG00000151413.17|nucleotide binding protein like
hg38_v1_chr7_-_78771265_78771344	0.506083	BRCA1	ENST00000630991.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2	ENST00000629359.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr11_+_101914997_101915036	0.495044	BRCA1	ENST00000263468.13|CEP126|ENSG00000110318.15|centrosomal protein 126
hg38_v1_chr5_+_140700437_140700457	0.492302	BRCA1	ENST00000274712.8|ZMAT2|ENSG00000146007.11|zinc finger matrin-type 2
hg38_v1_chr10_-_100529854_100530000	0.475932	BRCA1	ENST00000370320.4|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000299166.9|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8	ENST00000370322.5|NDUFB8|ENSG00000166136.16|NADH:ubiquinone oxidoreductase subunit B8
hg38_v1_chr2_-_144517506_144517559	0.465988	BRCA1	ENST00000431672.4|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000558170.6|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2
hg38_v1_chr4_-_48780242_48780318	0.461189	BRCA1	ENST00000507711.5|FRYL|ENSG00000075539.15|FRY like transcription coactivator	ENST00000358350.9|FRYL|ENSG00000075539.15|FRY like transcription coactivator
hg38_v1_chr10_+_120851427_120851487	0.44801	BRCA1	ENST00000604585.5|WDR11|ENSG00000120008.16|WD repeat domain 11
hg38_v1_chr2_-_144517663_144518026	0.439223	BRCA1	ENST00000427902.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000462355.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000470879.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000409487.7|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000435831.5|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2	ENST00000630572.2|ZEB2|ENSG00000169554.22|zinc finger E-box binding homeobox 2
hg38_v1_chr2_-_49973939_49974014	0.428704	BRCA1	ENST00000630656.1|NRXN1|ENSG00000179915.24|neurexin 1
hg38_v1_chr11_+_33258304_33258384	0.426368	BRCA1	ENST00000531504.5|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3	ENST00000456517.2|HIPK3|ENSG00000110422.12|homeodomain interacting protein kinase 3
hg38_v1_chr13_+_27251569_27251604	0.424161	BRCA1	ENST00000272274.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000319826.8|RPL21|ENSG00000122026.11|ribosomal protein L21	ENST00000326092.8|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr2_+_108378176_108378193	0.420924	BRCA1	ENST00000409309.3|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr5_+_126462339_126462357	0.418881	BRCA1	ENST00000502348.5|GRAMD2B|ENSG00000155324.10|GRAM domain containing 2B
hg38_v1_chr13_+_27251545_27251566	0.415966	BRCA1	ENST00000311549.11|RPL21|ENSG00000122026.11|ribosomal protein L21
hg38_v1_chr4_+_73436244_73436257	0.410691	BRCA1	ENST00000226359.2|AFP|ENSG00000081051.8|alpha fetoprotein
hg38_v1_chr4_+_73436198_73436243	0.393389	BRCA1	ENST00000395792.7|AFP|ENSG00000081051.8|alpha fetoprotein
hg38_v1_chr11_-_13463168_13463303	0.363239	BRCA1	ENST00000526841.1|BTBD10|ENSG00000148925.11|BTB domain containing 10	ENST00000278174.10|BTBD10|ENSG00000148925.11|BTB domain containing 10	ENST00000529708.5|BTBD10|ENSG00000148925.11|BTB domain containing 10	ENST00000528120.5|BTBD10|ENSG00000148925.11|BTB domain containing 10
hg38_v1_chr2_+_195657308_195657449	0.359273	BRCA1	ENST00000418005.1|SLC39A10|ENSG00000196950.14|solute carrier family 39 member 10
hg38_v1_chrX_-_71068384_71068448	0.346819	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.12|sorting nexin 12	ENST00000622259.4|SNX12|ENSG00000147164.12|sorting nexin 12
hg38_v1_chr9_-_83978429_83978452	0.345488	BRCA1	ENST00000351839.7|HNRNPK|ENSG00000165119.21|heterogeneous nuclear ribonucleoprotein K
hg38_v1_chr9_-_21031614_21031653	0.345042	BRCA1	ENST00000495827.3|HACD4|ENSG00000188921.14|3-hydroxyacyl-CoA dehydratase 4
hg38_v1_chr3_-_116445458_116445533	0.335534	BRCA1	ENST00000490035.7|LSAMP|ENSG00000185565.12|limbic system associated membrane protein
hg38_v1_chr8_-_17002327_17002351	0.330361	BRCA1	ENST00000180166.6|FGF20|ENSG00000078579.9|fibroblast growth factor 20
hg38_v1_chr11_-_72112750_72112780	0.309326	BRCA1	ENST00000545680.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000543587.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000538393.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535234.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000227618.8|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15	ENST00000535503.5|ANAPC15|ENSG00000110200.8|anaphase promoting complex subunit 15
hg38_v1_chr1_-_170074568_170074738	0.273005	BRCA1	ENST00000367767.5|KIFAP3|ENSG00000075945.13|kinesin associated protein 3	ENST00000361580.7|KIFAP3|ENSG00000075945.13|kinesin associated protein 3	ENST00000538366.5|KIFAP3|ENSG00000075945.13|kinesin associated protein 3
hg38_v1_chr3_+_184338826_184338854	0.271375	BRCA1	ENST00000453072.5|FAM131A|ENSG00000175182.15|family with sequence similarity 131 member A
hg38_v1_chr19_+_47130782_47130900	0.26467	BRCA1	ENST00000597808.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000413379.7|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000600706.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000270225.12|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000598840.5|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000600753.1|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1	ENST00000392776.3|SAE1|ENSG00000142230.13|SUMO1 activating enzyme subunit 1
hg38_v1_chr7_-_78770859_78770933	0.263911	BRCA1	ENST00000636717.1|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr11_-_61429934_61429992	0.257457	BRCA1	ENST00000541963.5|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7	ENST00000477890.6|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7	ENST00000439958.8|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr14_+_22040576_22040601	0.248667	BRCA1	ENST00000390448.3|TRAV20|ENSG00000211800.3|T cell receptor alpha variable 20
hg38_v1_chr7_-_78771058_78771104	0.243785	BRCA1	ENST00000628781.1|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr11_-_61430008_61430031	0.232356	BRCA1	ENST00000394888.8|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr2_+_108377947_108377977	0.225301	BRCA1	ENST00000272452.7|SULT1C4|ENSG00000198075.10|sulfotransferase family 1C member 4
hg38_v1_chr6_-_158999748_158999839	0.221668	BRCA1	ENST00000449822.5|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr7_+_100119607_100119698	0.212966	BRCA1	ENST00000262932.5|CNPY4|ENSG00000166997.8|canopy FGF signaling regulator 4
hg38_v1_chr3_-_177196451_177196489	0.20283	BRCA1	ENST00000430069.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000630796.2|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000428970.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1
hg38_v1_chr12_-_116881431_116881455	0.202684	BRCA1	ENST00000257572.5|HRK|ENSG00000135116.9|harakiri, BCL2 interacting protein
hg38_v1_chr8_+_96761232_96761247	0.200128	BRCA1	ENST00000521142.1|CPQ|ENSG00000104324.16|carboxypeptidase Q
hg38_v1_chr3_-_177196402_177196446	0.198827	BRCA1	ENST00000437738.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000424913.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1	ENST00000443315.5|TBL1XR1|ENSG00000177565.18|TBL1X receptor 1
hg38_v1_chr6_+_33204645_33204700	0.1834	BRCA1	ENST00000374662.4|HSD17B8|ENSG00000204228.4|hydroxysteroid 17-beta dehydrogenase 8
hg38_v1_chr11_+_1099730_1099770	0.177216	BRCA1	ENST00000674892.1|MUC2|ENSG00000198788.9|mucin 2, oligomeric mucus/gel-forming
hg38_v1_chr11_+_61430036_61430069	0.175342	BRCA1	ENST00000541135.5|ENSG00000256591.5|ENSG00000256591.5|novel transcript
hg38_v1_chr2_-_151261839_151261870	0.173026	BRCA1	ENST00000331426.6|RBM43|ENSG00000184898.7|RNA binding motif protein 43
hg38_v1_chr7_-_78771108_78771148	0.167901	BRCA1	ENST00000626691.2|MAGI2|ENSG00000187391.22|membrane associated guanylate kinase, WW and PDZ domain containing 2
hg38_v1_chr8_-_80171106_80171200	0.161775	BRCA1	ENST00000519303.6|TPD52|ENSG00000076554.16|tumor protein D52
hg38_v1_chr14_+_22163226_22163243	0.161452	BRCA1	ENST00000390458.3|TRAV29DV5|ENSG00000211810.3|T cell receptor alpha variable 29/delta variable 5
hg38_v1_chr19_-_34677157_34677161	0.160678	BRCA1	ENST00000601241.6|SCGB2B2|ENSG00000205209.8|secretoglobin family 2B member 2
hg38_v1_chr4_-_184649436_184649509	0.160056	BRCA1	ENST00000308394.9|CASP3|ENSG00000164305.19|caspase 3	ENST00000517513.5|CASP3|ENSG00000164305.19|caspase 3	ENST00000447121.2|CASP3|ENSG00000164305.19|caspase 3	ENST00000393588.8|CASP3|ENSG00000164305.19|caspase 3	ENST00000523916.5|CASP3|ENSG00000164305.19|caspase 3
hg38_v1_chr12_-_80937918_80937954	0.155756	BRCA1	ENST00000552864.6|LIN7A|ENSG00000111052.8|lin-7 homolog A, crumbs cell polarity complex component
hg38_v1_chr17_+_76376581_76376661	0.150167	BRCA1	ENST00000591651.5|SPHK1|ENSG00000176170.14|sphingosine kinase 1	ENST00000545180.5|SPHK1|ENSG00000176170.14|sphingosine kinase 1
hg38_v1_chr14_-_68794597_68794736	0.143403	BRCA1	ENST00000336440.3|ZFP36L1|ENSG00000185650.10|ZFP36 ring finger protein like 1
hg38_v1_chr15_+_57248015_57248041	0.129009	BRCA1	ENST00000559710.5|TCF12|ENSG00000140262.18|transcription factor 12	ENST00000559703.1|TCF12|ENSG00000140262.18|transcription factor 12
hg38_v1_chr8_+_96760974_96761006	0.127121	BRCA1	ENST00000519484.1|CPQ|ENSG00000104324.16|carboxypeptidase Q
hg38_v1_chr14_+_72926377_72926511	0.12534	BRCA1	ENST00000353777.7|DCAF4|ENSG00000119599.17|DDB1 and CUL4 associated factor 4	ENST00000358377.7|DCAF4|ENSG00000119599.17|DDB1 and CUL4 associated factor 4	ENST00000394234.6|DCAF4|ENSG00000119599.17|DDB1 and CUL4 associated factor 4	ENST00000509153.5|DCAF4|ENSG00000119599.17|DDB1 and CUL4 associated factor 4	ENST00000555042.5|DCAF4|ENSG00000119599.17|DDB1 and CUL4 associated factor 4
hg38_v1_chrX_-_143635081_143635204	0.123328	BRCA1	ENST00000338017.8|SLITRK4|ENSG00000179542.16|SLIT and NTRK like family member 4
hg38_v1_chr1_-_160262501_160262514	0.120511	BRCA1	ENST00000447377.5|DCAF8|ENSG00000132716.19|DDB1 and CUL4 associated factor 8
hg38_v1_chr14_+_88385643_88385711	0.118947	BRCA1	ENST00000393545.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000356583.9|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000555401.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7	ENST00000553885.5|SPATA7|ENSG00000042317.17|spermatogenesis associated 7
hg38_v1_chr9_+_2015969_2016142	0.117292	BRCA1	ENST00000636903.1|SMARCA2|ENSG00000080503.24|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENST00000637352.1|SMARCA2|ENSG00000080503.24|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
hg38_v1_chr13_-_30464234_30464372	0.116945	BRCA1	ENST00000399489.5|HMGB1|ENSG00000189403.15|high mobility group box 1	ENST00000339872.8|HMGB1|ENSG00000189403.15|high mobility group box 1
hg38_v1_chr20_+_58907981_58908019	0.110235	BRCA1	ENST00000656419.1|GNAS|ENSG00000087460.29|GNAS complex locus
hg38_v1_chr19_-_37172670_37172741	0.108821	BRCA1	ENST00000588354.1|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000292841.10|ZNF585A|ENSG00000196967.11|zinc finger protein 585A	ENST00000356958.8|ZNF585A|ENSG00000196967.11|zinc finger protein 585A
hg38_v1_chr18_-_26091175_26091226	0.106231	BRCA1	ENST00000579061.5|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex	ENST00000542420.6|SS18|ENSG00000141380.14|SS18 subunit of BAF chromatin remodeling complex
hg38_v1_chr5_+_146203544_146203587	0.10598	BRCA1	ENST00000506502.2|ENSG00000275740.1|ENSG00000275740.1|novel readthrough transcript
hg38_v1_chr1_+_171557845_171557955	0.101864	BRCA1	ENST00000644916.1|PRRC2C|ENSG00000117523.17|proline rich coiled-coil 2C
hg38_v1_chr13_+_102799322_102799356	0.0938145	BRCA1	ENST00000639132.1|BIVM-ERCC5|ENSG00000270181.3|BIVM-ERCC5 readthrough
hg38_v1_chr12_-_95116967_95116977	0.0932273	BRCA1	ENST00000551521.5|FGD6|ENSG00000180263.14|FYVE, RhoGEF and PH domain containing 6
hg38_v1_chr11_-_119340914_119340940	0.0929492	BRCA1	ENST00000634633.1|C1QTNF5|ENSG00000223953.6|C1q and TNF related 5
hg38_v1_chr5_+_146203593_146203617	0.0912377	BRCA1	ENST00000265271.7|RBM27|ENSG00000091009.8|RNA binding motif protein 27
hg38_v1_chr20_-_49913693_49913739	0.089387	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.11|spermatogenesis associated 2
hg38_v1_chr12_-_66678934_66679145	0.0871311	BRCA1	ENST00000545666.5|GRIP1|ENSG00000155974.13|glutamate receptor interacting protein 1	ENST00000398016.7|GRIP1|ENSG00000155974.13|glutamate receptor interacting protein 1	ENST00000359742.9|GRIP1|ENSG00000155974.13|glutamate receptor interacting protein 1	ENST00000538211.5|GRIP1|ENSG00000155974.13|glutamate receptor interacting protein 1
hg38_v1_chr19_-_12801787_12801807	0.0839876	BRCA1	ENST00000334482.9|PRDX2|ENSG00000167815.12|peroxiredoxin 2	ENST00000301522.3|PRDX2|ENSG00000167815.12|peroxiredoxin 2
hg38_v1_chr12_+_401621_401669	0.0761111	BRCA1	ENST00000412006.6|CCDC77|ENSG00000120647.10|coiled-coil domain containing 77	ENST00000239830.9|CCDC77|ENSG00000120647.10|coiled-coil domain containing 77
hg38_v1_chr17_-_43661915_43661929	0.0751629	BRCA1	ENST00000318579.9|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1	ENST00000393661.2|MEOX1|ENSG00000005102.14|mesenchyme homeobox 1
hg38_v1_chr10_-_73625951_73626016	0.0657783	BRCA1	ENST00000433394.1|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54	ENST00000422491.7|USP54|ENSG00000166348.19|ubiquitin specific peptidase 54
hg38_v1_chr2_-_133568393_133568482	0.0657285	BRCA1	ENST00000317721.10|NCKAP5|ENSG00000176771.17|NCK associated protein 5	ENST00000405974.7|NCKAP5|ENSG00000176771.17|NCK associated protein 5	ENST00000409261.6|NCKAP5|ENSG00000176771.17|NCK associated protein 5	ENST00000409213.5|NCKAP5|ENSG00000176771.17|NCK associated protein 5
hg38_v1_chr6_-_43014254_43014293	0.0590753	BRCA1	ENST00000642748.1|MEA1|ENSG00000124733.5|male-enhanced antigen 1
hg38_v1_chr20_-_35438218_35438266	0.0496183	BRCA1	ENST00000374369.8|GDF5|ENSG00000125965.9|growth differentiation factor 5
hg38_v1_chr2_-_179049986_179050157	0.0478115	BRCA1	ENST00000409284.1|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141	ENST00000443758.6|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141	ENST00000446116.5|CCDC141|ENSG00000163492.15|coiled-coil domain containing 141
hg38_v1_chr1_+_161766282_161766303	0.0473792	BRCA1	ENST00000680688.1|ATF6|ENSG00000118217.7|activating transcription factor 6
hg38_v1_chr1_+_161766347_161766361	0.0434398	BRCA1	ENST00000679833.1|ATF6|ENSG00000118217.7|activating transcription factor 6
hg38_v1_chr11_+_73308237_73308317	0.0406528	BRCA1	ENST00000263674.4|ARHGEF17|ENSG00000110237.5|Rho guanine nucleotide exchange factor 17
hg38_v1_chr19_+_48469354_48469433	0.0384044	BRCA1	ENST00000452733.7|CYTH2|ENSG00000105443.15|cytohesin 2	ENST00000641098.1|CYTH2|ENSG00000105443.15|cytohesin 2
hg38_v1_chr9_-_92424427_92424480	0.0378604	BRCA1	ENST00000375550.5|OMD|ENSG00000127083.8|osteomodulin
hg38_v1_chr6_+_16129077_16129171	0.0320914	BRCA1	ENST00000356840.8|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein	ENST00000349606.4|MYLIP|ENSG00000007944.15|myosin regulatory light chain interacting protein
hg38_v1_chr6_-_170553216_170553334	0.0294894	BRCA1	ENST00000262193.7|PSMB1|ENSG00000008018.9|proteasome 20S subunit beta 1
hg38_v1_chr2_+_203014721_203014770	0.028265	BRCA1	ENST00000683091.1|NBEAL1|ENSG00000144426.19|neurobeachin like 1
hg38_v1_chr11_-_61429385_61429550	0.0254873	BRCA1	ENST00000413184.6|CPSF7|ENSG00000149532.16|cleavage and polyadenylation specific factor 7
hg38_v1_chr6_-_159000174_159000222	0.0251607	BRCA1	ENST00000367069.7|RSPH3|ENSG00000130363.13|radial spoke head 3
hg38_v1_chr13_+_29428603_29428641	0.0189328	BRCA1	ENST00000380808.6|MTUS2|ENSG00000132938.22|microtubule associated scaffold protein 2
hg38_v1_chr11_-_27700472_27700494	0.0141881	BRCA1	ENST00000418212.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor	ENST00000533246.5|BDNF|ENSG00000176697.20|brain derived neurotrophic factor
hg38_v1_chr14_+_21042352_21042369	0.0113155	BRCA1	ENST00000298690.5|RNASE7|ENSG00000165799.5|ribonuclease A family member 7
hg38_v1_chr13_+_29428709_29428726	0.00660221	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.22|microtubule associated scaffold protein 2
hg38_v1_chr22_+_41621163_41621273	0.00645744	BRCA1	ENST00000428575.6|XRCC6|ENSG00000196419.13|X-ray repair cross complementing 6
hg38_v1_chr2_-_24972032_24972094	0.00383904	BRCA1	ENST00000534855.5|DNAJC27|ENSG00000115137.12|DnaJ heat shock protein family (Hsp40) member C27
