hg38_v1_chr12_-_10849464_10849482	3.27775	HOXD9	ENST00000544994.5|PRR4|ENSG00000111215.12|proline rich 4	ENST00000228811.8|PRR4|ENSG00000111215.12|proline rich 4	ENST00000540107.2|PRR4|ENSG00000111215.12|proline rich 4
hg38_v1_chr2_-_85668172_85668208	2.55892	HOXD9	ENST00000428225.5|SFTPB|ENSG00000168878.19|surfactant protein B	ENST00000519937.7|SFTPB|ENSG00000168878.19|surfactant protein B
hg38_v1_chr4_-_76023489_76023504	2.42799	HOXD9	ENST00000306602.3|CXCL10|ENSG00000169245.6|C-X-C motif chemokine ligand 10
hg38_v1_chr12_-_91153149_91153193	2.27503	HOXD9	ENST00000550758.1|DCN|ENSG00000011465.18|decorin
hg38_v1_chr3_-_116444983_116445006	2.21453	HOXD9	ENST00000333617.8|LSAMP|ENSG00000185565.12|limbic system associated membrane protein
hg38_v1_chr1_+_81306096_81306191	1.89811	HOXD9	ENST00000370721.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2	ENST00000370727.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2	ENST00000370725.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2	ENST00000370723.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2	ENST00000370728.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2	ENST00000370730.5|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2
hg38_v1_chr5_+_95391361_95391370	1.84534	HOXD9	ENST00000283357.10|FAM81B|ENSG00000153347.10|family with sequence similarity 81 member B
hg38_v1_chr7_-_16881967_16881994	1.59963	HOXD9	ENST00000402239.7|AGR3|ENSG00000173467.9|anterior gradient 3, protein disulphide isomerase family member	ENST00000310398.7|AGR3|ENSG00000173467.9|anterior gradient 3, protein disulphide isomerase family member	ENST00000414935.1|AGR3|ENSG00000173467.9|anterior gradient 3, protein disulphide isomerase family member
hg38_v1_chr4_+_168712159_168712211	1.58623	HOXD9	ENST00000510998.5|PALLD|ENSG00000129116.19|palladin, cytoskeletal associated protein
hg38_v1_chr3_-_139539577_139539593	1.27162	HOXD9	ENST00000619087.4|RBP1|ENSG00000114115.10|retinol binding protein 1
hg38_v1_chr3_-_139539679_139539829	1.23158	HOXD9	ENST00000483943.6|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000672186.1|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000232219.6|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000617459.4|RBP1|ENSG00000114115.10|retinol binding protein 1	ENST00000492918.1|RBP1|ENSG00000114115.10|retinol binding protein 1
hg38_v1_chr3_-_149377637_149377657	1.21534	HOXD9	ENST00000305366.8|TM4SF1|ENSG00000169908.12|transmembrane 4 L six family member 1
hg38_v1_chr17_+_9576627_9576648	1.20132	HOXD9	ENST00000396219.7|CFAP52|ENSG00000166596.15|cilia and flagella associated protein 52	ENST00000352665.10|CFAP52|ENSG00000166596.15|cilia and flagella associated protein 52
hg38_v1_chr17_+_70075215_70075238	1.16871	HOXD9	ENST00000283936.5|KCNJ16|ENSG00000153822.15|potassium inwardly rectifying channel subfamily J member 16	ENST00000615244.4|KCNJ16|ENSG00000153822.15|potassium inwardly rectifying channel subfamily J member 16	ENST00000392671.6|KCNJ16|ENSG00000153822.15|potassium inwardly rectifying channel subfamily J member 16
hg38_v1_chr6_+_118548289_118548315	1.15468	HOXD9	ENST00000357525.6|PLN|ENSG00000198523.6|phospholamban
hg38_v1_chr3_-_100846405_100846430	1.14739	HOXD9	ENST00000495591.5|ABI3BP|ENSG00000154175.18|ABI family member 3 binding protein	ENST00000466947.5|ABI3BP|ENSG00000154175.18|ABI family member 3 binding protein
hg38_v1_chr1_+_37556913_37556970	1.12574	HOXD9	ENST00000296218.8|DNALI1|ENSG00000163879.11|dynein axonemal light intermediate chain 1	ENST00000652629.1|DNALI1|ENSG00000163879.11|dynein axonemal light intermediate chain 1
hg38_v1_chr1_+_15756659_15756686	1.11115	HOXD9	ENST00000375771.5|FBLIM1|ENSG00000162458.13|filamin binding LIM protein 1
hg38_v1_chr4_-_76007501_76007515	1.09961	HOXD9	ENST00000264888.6|CXCL9|ENSG00000138755.6|C-X-C motif chemokine ligand 9
hg38_v1_chr1_+_160400543_160400618	1.08967	HOXD9	ENST00000368061.3|VANGL2|ENSG00000162738.6|VANGL planar cell polarity protein 2
hg38_v1_chr1_-_94925759_94925808	1.06742	HOXD9	ENST00000415017.1|CNN3|ENSG00000117519.16|calponin 3	ENST00000545882.5|CNN3|ENSG00000117519.16|calponin 3
hg38_v1_chr8_-_85341659_85341700	1.03784	HOXD9	ENST00000522389.5|CA1|ENSG00000133742.14|carbonic anhydrase 1
hg38_v1_chr22_+_22906342_22906342	1.03595	HOXD9	ENST00000390325.2|IGLC3|ENSG00000211679.2|immunoglobulin lambda constant 3 (Kern-Oz+ marker)
hg38_v1_chr16_-_3372666_3372668	0.962634	HOXD9	ENST00000399974.5|MTRNR2L4|ENSG00000232196.4|MT-RNR2 like 4
hg38_v1_chr9_-_92482350_92482367	0.948076	HOXD9	ENST00000375543.2|ASPN|ENSG00000106819.13|asporin
hg38_v1_chr1_-_58577244_58577260	0.91962	HOXD9	ENST00000371225.4|TACSTD2|ENSG00000184292.7|tumor associated calcium signal transducer 2
hg38_v1_chr4_+_73740541_73740576	0.918722	HOXD9	ENST00000401931.1|CXCL8|ENSG00000169429.11|C-X-C motif chemokine ligand 8	ENST00000307407.8|CXCL8|ENSG00000169429.11|C-X-C motif chemokine ligand 8
hg38_v1_chr6_-_110358313_110358364	0.897568	HOXD9	ENST00000338882.5|METTL24|ENSG00000053328.9|methyltransferase like 24
hg38_v1_chr9_+_12693327_12693460	0.895703	HOXD9	ENST00000388918.10|TYRP1|ENSG00000107165.13|tyrosinase related protein 1
hg38_v1_chr6_+_52423680_52423809	0.875401	HOXD9	ENST00000538167.2|EFHC1|ENSG00000096093.16|EF-hand domain containing 1
hg38_v1_chr12_-_88580459_88580479	0.865036	HOXD9	ENST00000552044.1|KITLG|ENSG00000049130.16|KIT ligand	ENST00000644744.1|KITLG|ENSG00000049130.16|KIT ligand	ENST00000357116.4|KITLG|ENSG00000049130.16|KIT ligand
hg38_v1_chr22_-_30246739_30246766	0.851776	HOXD9	ENST00000403987.3|LIF|ENSG00000128342.5|LIF interleukin 6 family cytokine	ENST00000249075.4|LIF|ENSG00000128342.5|LIF interleukin 6 family cytokine
hg38_v1_chr6_-_49713521_49713561	0.8378	HOXD9	ENST00000339139.5|CRISP2|ENSG00000124490.14|cysteine rich secretory protein 2
hg38_v1_chr5_+_122129533_122129566	0.829795	HOXD9	ENST00000296600.5|ZNF474|ENSG00000164185.6|zinc finger protein 474	ENST00000504912.1|ZNF474|ENSG00000164185.6|zinc finger protein 474	ENST00000505843.1|ZNF474|ENSG00000164185.6|zinc finger protein 474
hg38_v1_chr13_+_75839716_75839748	0.820702	HOXD9	ENST00000533809.2|LMO7|ENSG00000136153.20|LIM domain 7
hg38_v1_chr3_+_194136138_194136155	0.786193	HOXD9	ENST00000232424.4|HES1|ENSG00000114315.4|hes family bHLH transcription factor 1
hg38_v1_chr12_-_120325936_120326093	0.784031	HOXD9	ENST00000549767.1|PLA2G1B|ENSG00000170890.14|phospholipase A2 group IB
hg38_v1_chr2_+_89947508_89947513	0.781413	HOXD9	ENST00000491977.1|IGKV2D-29|ENSG00000243264.3|immunoglobulin kappa variable 2D-29
hg38_v1_chr4_+_168711416_168711581	0.733099	HOXD9	ENST00000649826.1|PALLD|ENSG00000129116.19|palladin, cytoskeletal associated protein
hg38_v1_chr4_-_167234426_167234510	0.719065	HOXD9	ENST00000541354.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000509854.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000512681.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000357545.9|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000510741.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000510403.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
hg38_v1_chr1_+_15756603_15756625	0.716199	HOXD9	ENST00000496928.6|FBLIM1|ENSG00000162458.13|filamin binding LIM protein 1	ENST00000508310.5|FBLIM1|ENSG00000162458.13|filamin binding LIM protein 1
hg38_v1_chr1_+_15756628_15756651	0.684996	HOXD9	ENST00000510393.5|FBLIM1|ENSG00000162458.13|filamin binding LIM protein 1	ENST00000430076.5|FBLIM1|ENSG00000162458.13|filamin binding LIM protein 1
hg38_v1_chr2_-_187448244_187448259	0.675318	HOXD9	ENST00000392370.8|CALCRL|ENSG00000064989.13|calcitonin receptor like receptor	ENST00000410068.5|CALCRL|ENSG00000064989.13|calcitonin receptor like receptor	ENST00000447403.5|CALCRL|ENSG00000064989.13|calcitonin receptor like receptor	ENST00000410102.5|CALCRL|ENSG00000064989.13|calcitonin receptor like receptor
hg38_v1_chr13_-_44474250_44474279	0.671201	HOXD9	ENST00000472477.1|TSC22D1|ENSG00000102804.15|TSC22 domain family member 1
hg38_v1_chr12_-_9116223_9116232	0.665588	HOXD9	ENST00000404455.2|A2M|ENSG00000175899.15|alpha-2-macroglobulin
hg38_v1_chr3_+_178558700_178558867	0.659497	HOXD9	ENST00000432997.5|KCNMB2|ENSG00000197584.12|potassium calcium-activated channel subfamily M regulatory beta subunit 2	ENST00000455865.5|KCNMB2|ENSG00000197584.12|potassium calcium-activated channel subfamily M regulatory beta subunit 2
hg38_v1_chr17_+_70075317_70075340	0.65874	HOXD9	ENST00000589377.1|KCNJ16|ENSG00000153822.15|potassium inwardly rectifying channel subfamily J member 16
hg38_v1_chr1_+_81699665_81699770	0.639409	HOXD9	ENST00000359929.7|ADGRL2|ENSG00000117114.20|adhesion G protein-coupled receptor L2
hg38_v1_chr20_+_59835853_59835881	0.629225	HOXD9	ENST00000492611.5|PHACTR3|ENSG00000087495.17|phosphatase and actin regulator 3
hg38_v1_chr1_-_25905098_25905144	0.621847	HOXD9	ENST00000374291.5|STMN1|ENSG00000117632.23|stathmin 1
hg38_v1_chr7_+_118224654_118224743	0.612148	HOXD9	ENST00000265224.9|ANKRD7|ENSG00000106013.15|ankyrin repeat domain 7	ENST00000486422.1|ANKRD7|ENSG00000106013.15|ankyrin repeat domain 7	ENST00000417525.5|ANKRD7|ENSG00000106013.15|ankyrin repeat domain 7
hg38_v1_chr6_-_106975616_106975637	0.61068	HOXD9	ENST00000610952.1|CD24|ENSG00000272398.6|CD24 molecule
hg38_v1_chr3_-_167474026_167474132	0.603558	HOXD9	ENST00000466903.1|SERPINI2|ENSG00000114204.15|serpin family I member 2	ENST00000264677.8|SERPINI2|ENSG00000114204.15|serpin family I member 2
hg38_v1_chr1_+_166989089_166989117	0.60204	HOXD9	ENST00000367870.6|MAEL|ENSG00000143194.13|maelstrom spermatogenic transposon silencer
hg38_v1_chr19_-_56314788_56314925	0.601904	HOXD9	ENST00000592509.5|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A	ENST00000592679.5|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A	ENST00000683990.1|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A	ENST00000588442.5|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A	ENST00000593106.5|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A	ENST00000587492.5|ZSCAN5A|ENSG00000131848.10|zinc finger and SCAN domain containing 5A
hg38_v1_chr10_+_113751675_113751695	0.601056	HOXD9	ENST00000369312.9|PLEKHS1|ENSG00000148735.15|pleckstrin homology domain containing S1	ENST00000619563.5|PLEKHS1|ENSG00000148735.15|pleckstrin homology domain containing S1
hg38_v1_chr11_-_102530738_102530757	0.579254	HOXD9	ENST00000260227.5|MMP7|ENSG00000137673.9|matrix metallopeptidase 7
hg38_v1_chr3_-_146528750_146528821	0.577908	HOXD9	ENST00000483300.5|PLSCR1|ENSG00000188313.13|phospholipid scramblase 1
hg38_v1_chr8_-_85341705_85341719	0.552004	HOXD9	ENST00000517618.5|CA1|ENSG00000133742.14|carbonic anhydrase 1
hg38_v1_chr1_+_100719734_100719764	0.549112	HOXD9	ENST00000370119.8|VCAM1|ENSG00000162692.12|vascular cell adhesion molecule 1	ENST00000294728.7|VCAM1|ENSG00000162692.12|vascular cell adhesion molecule 1	ENST00000347652.6|VCAM1|ENSG00000162692.12|vascular cell adhesion molecule 1	ENST00000370115.1|VCAM1|ENSG00000162692.12|vascular cell adhesion molecule 1
hg38_v1_chr5_-_79512794_79512833	0.54765	HOXD9	ENST00000282260.10|HOMER1|ENSG00000152413.15|homer scaffold protein 1	ENST00000508576.5|HOMER1|ENSG00000152413.15|homer scaffold protein 1	ENST00000535690.1|HOMER1|ENSG00000152413.15|homer scaffold protein 1
hg38_v1_chr2_-_174847525_174847631	0.547567	HOXD9	ENST00000295497.12|CHN1|ENSG00000128656.15|chimerin 1	ENST00000652036.1|CHN1|ENSG00000128656.15|chimerin 1	ENST00000444394.6|CHN1|ENSG00000128656.15|chimerin 1	ENST00000650731.1|CHN1|ENSG00000128656.15|chimerin 1
hg38_v1_chr5_-_139439488_139439531	0.546809	HOXD9	ENST00000302060.10|DNAJC18|ENSG00000170464.10|DnaJ heat shock protein family (Hsp40) member C18
hg38_v1_chr3_-_167653916_167653948	0.546602	HOXD9	ENST00000488012.5|WDR49|ENSG00000174776.12|WD repeat domain 49	ENST00000682715.1|WDR49|ENSG00000174776.12|WD repeat domain 49	ENST00000647816.1|WDR49|ENSG00000174776.12|WD repeat domain 49
hg38_v1_chr2_+_209580024_209580056	0.544332	HOXD9	ENST00000392194.5|MAP2|ENSG00000078018.21|microtubule associated protein 2
hg38_v1_chr4_-_167234579_167234590	0.534391	HOXD9	ENST00000502330.5|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000357154.7|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3	ENST00000421836.6|SPOCK3|ENSG00000196104.11|SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
hg38_v1_chr11_+_112176364_112176400	0.528222	HOXD9	ENST00000526088.5|BCO2|ENSG00000197580.13|beta-carotene oxygenase 2	ENST00000532593.5|BCO2|ENSG00000197580.13|beta-carotene oxygenase 2	ENST00000531169.5|BCO2|ENSG00000197580.13|beta-carotene oxygenase 2
hg38_v1_chr10_+_5364955_5364971	0.516581	HOXD9	ENST00000380433.5|UCN3|ENSG00000178473.7|urocortin 3
hg38_v1_chr5_+_141208697_141208727	0.51217	HOXD9	ENST00000624949.1|PCDHB12|ENSG00000120328.6|protocadherin beta 12	ENST00000622978.1|PCDHB12|ENSG00000120328.6|protocadherin beta 12	ENST00000239450.4|PCDHB12|ENSG00000120328.6|protocadherin beta 12
hg38_v1_chr6_-_49866527_49866540	0.501036	HOXD9	ENST00000335847.9|CRISP1|ENSG00000124812.15|cysteine rich secretory protein 1
hg38_v1_chr12_+_19205294_19205325	0.475641	HOXD9	ENST00000424268.5|PLEKHA5|ENSG00000052126.15|pleckstrin homology domain containing A5
hg38_v1_chr1_+_44674688_44674727	0.474989	HOXD9	ENST00000418644.5|ARMH1|ENSG00000198520.12|armadillo like helical domain containing 1	ENST00000458657.6|ARMH1|ENSG00000198520.12|armadillo like helical domain containing 1	ENST00000535358.6|ARMH1|ENSG00000198520.12|armadillo like helical domain containing 1	ENST00000441519.5|ARMH1|ENSG00000198520.12|armadillo like helical domain containing 1	ENST00000445071.5|ARMH1|ENSG00000198520.12|armadillo like helical domain containing 1
hg38_v1_chr12_-_30735014_30735063	0.464844	HOXD9	ENST00000433722.6|CAPRIN2|ENSG00000110888.17|caprin family member 2
hg38_v1_chr12_-_56741535_56741535	0.463259	HOXD9	ENST00000647707.1|ENSG00000285625.1|ENSG00000285625.1|novel protein
hg38_v1_chr9_-_121050264_121050282	0.454763	HOXD9	ENST00000223642.3|C5|ENSG00000106804.8|complement C5
hg38_v1_chr22_-_35840218_35840434	0.450118	HOXD9	ENST00000414461.6|RBFOX2|ENSG00000100320.23|RNA binding fox-1 homolog 2	ENST00000416721.6|RBFOX2|ENSG00000100320.23|RNA binding fox-1 homolog 2	ENST00000449924.6|RBFOX2|ENSG00000100320.23|RNA binding fox-1 homolog 2	ENST00000262829.11|RBFOX2|ENSG00000100320.23|RNA binding fox-1 homolog 2	ENST00000397305.3|RBFOX2|ENSG00000100320.23|RNA binding fox-1 homolog 2
hg38_v1_chr6_-_49866453_49866499	0.448436	HOXD9	ENST00000507853.5|CRISP1|ENSG00000124812.15|cysteine rich secretory protein 1
hg38_v1_chr22_-_41286168_41286226	0.43971	HOXD9	ENST00000356244.8|RANGAP1|ENSG00000100401.20|Ran GTPase activating protein 1
hg38_v1_chr18_+_616672_616681	0.435243	HOXD9	ENST00000338387.11|CLUL1|ENSG00000079101.16|clusterin like 1
hg38_v1_chr4_-_185649524_185649606	0.434418	HOXD9	ENST00000451974.5|SORBS2|ENSG00000154556.18|sorbin and SH3 domain containing 2
hg38_v1_chr10_+_102854251_102854285	0.428852	HOXD9	ENST00000339834.10|BORCS7|ENSG00000166275.16|BLOC-1 related complex subunit 7	ENST00000369883.3|BORCS7|ENSG00000166275.16|BLOC-1 related complex subunit 7
hg38_v1_chr12_+_40742342_40742356	0.427239	HOXD9	ENST00000548005.5|CNTN1|ENSG00000018236.15|contactin 1	ENST00000552248.5|CNTN1|ENSG00000018236.15|contactin 1
hg38_v1_chr13_-_33350619_33350685	0.423857	HOXD9	ENST00000439831.1|STARD13|ENSG00000133121.21|StAR related lipid transfer domain containing 13	ENST00000567873.1|STARD13|ENSG00000133121.21|StAR related lipid transfer domain containing 13
hg38_v1_chr2_-_174847765_174847801	0.420381	HOXD9	ENST00000443238.6|CHN1|ENSG00000128656.15|chimerin 1
hg38_v1_chr10_+_52128343_52128355	0.419573	HOXD9	ENST00000672084.1|PRKG1|ENSG00000185532.20|protein kinase cGMP-dependent 1
hg38_v1_chr11_+_67586104_67586174	0.417476	HOXD9	ENST00000495996.1|GSTP1|ENSG00000084207.18|glutathione S-transferase pi 1
hg38_v1_chr4_-_69639642_69639642	0.413136	HOXD9	ENST00000604629.6|UGT2A2|ENSG00000271271.6|UDP glucuronosyltransferase family 2 member A2	ENST00000604021.1|UGT2A2|ENSG00000271271.6|UDP glucuronosyltransferase family 2 member A2
hg38_v1_chr11_+_112175526_112175756	0.410373	HOXD9	ENST00000532612.5|BCO2|ENSG00000197580.13|beta-carotene oxygenase 2	ENST00000438022.5|BCO2|ENSG00000197580.13|beta-carotene oxygenase 2
hg38_v1_chr14_+_61697622_61697717	0.410211	HOXD9	ENST00000539097.2|HIF1A|ENSG00000100644.17|hypoxia inducible factor 1 subunit alpha
hg38_v1_chr3_+_2892199_2892237	0.405423	HOXD9	ENST00000397459.6|CNTN4|ENSG00000144619.15|contactin 4
hg38_v1_chr3_-_99850976_99851075	0.399553	HOXD9	ENST00000487087.5|FILIP1L|ENSG00000168386.19|filamin A interacting protein 1 like
hg38_v1_chr12_+_119334696_119334719	0.393453	HOXD9	ENST00000536742.5|CCDC60|ENSG00000183273.7|coiled-coil domain containing 60
hg38_v1_chr6_-_131000722_131000767	0.393339	HOXD9	ENST00000528282.5|EPB41L2|ENSG00000079819.19|erythrocyte membrane protein band 4.1 like 2
hg38_v1_chr8_+_54616057_54616072	0.390103	HOXD9	ENST00000637698.1|RP1|ENSG00000104237.11|RP1 axonemal microtubule associated
hg38_v1_chr11_-_13495984_13496002	0.386088	HOXD9	ENST00000282091.6|PTH|ENSG00000152266.7|parathyroid hormone
hg38_v1_chr11_-_13496018_13496181	0.38125	HOXD9	ENST00000529816.1|PTH|ENSG00000152266.7|parathyroid hormone
hg38_v1_chr4_+_70195719_70195737	0.377566	HOXD9	ENST00000683306.1|ODAM|ENSG00000109205.17|odontogenic, ameloblast associated
hg38_v1_chr7_-_122699108_122699122	0.371093	HOXD9	ENST00000340112.3|RNF133|ENSG00000188050.3|ring finger protein 133
hg38_v1_chr15_-_99249523_99249615	0.368653	HOXD9	ENST00000560235.1|TTC23|ENSG00000103852.13|tetratricopeptide repeat domain 23	ENST00000394132.7|TTC23|ENSG00000103852.13|tetratricopeptide repeat domain 23	ENST00000560860.5|TTC23|ENSG00000103852.13|tetratricopeptide repeat domain 23	ENST00000558078.5|TTC23|ENSG00000103852.13|tetratricopeptide repeat domain 23	ENST00000560772.5|TTC23|ENSG00000103852.13|tetratricopeptide repeat domain 23
hg38_v1_chr18_+_616711_616721	0.363302	HOXD9	ENST00000579494.1|CLUL1|ENSG00000079101.16|clusterin like 1
hg38_v1_chr8_+_78516329_78516371	0.361551	HOXD9	ENST00000396418.7|PKIA|ENSG00000171033.13|cAMP-dependent protein kinase inhibitor alpha	ENST00000352966.9|PKIA|ENSG00000171033.13|cAMP-dependent protein kinase inhibitor alpha
hg38_v1_chr3_-_27456743_27456786	0.353803	HOXD9	ENST00000295736.9|SLC4A7|ENSG00000033867.16|solute carrier family 4 member 7	ENST00000428386.5|SLC4A7|ENSG00000033867.16|solute carrier family 4 member 7	ENST00000428179.1|SLC4A7|ENSG00000033867.16|solute carrier family 4 member 7
hg38_v1_chr2_+_172821575_172821598	0.347435	HOXD9	ENST00000397087.7|RAPGEF4|ENSG00000091428.18|Rap guanine nucleotide exchange factor 4
hg38_v1_chr17_-_73227700_73227748	0.341705	HOXD9	ENST00000579872.1|FAM104A|ENSG00000133193.12|family with sequence similarity 104 member A	ENST00000580032.1|FAM104A|ENSG00000133193.12|family with sequence similarity 104 member A
hg38_v1_chr12_+_28452493_28452542	0.339807	HOXD9	ENST00000542801.5|CCDC91|ENSG00000123106.10|coiled-coil domain containing 91
hg38_v1_chr3_-_167653952_167653983	0.334735	HOXD9	ENST00000466760.5|WDR49|ENSG00000174776.12|WD repeat domain 49	ENST00000479765.5|WDR49|ENSG00000174776.12|WD repeat domain 49
hg38_v1_chr17_+_56153458_56153510	0.317273	HOXD9	ENST00000318698.6|ANKFN1|ENSG00000153930.13|ankyrin repeat and fibronectin type III domain containing 1	ENST00000682825.1|ANKFN1|ENSG00000153930.13|ankyrin repeat and fibronectin type III domain containing 1	ENST00000566473.6|ANKFN1|ENSG00000153930.13|ankyrin repeat and fibronectin type III domain containing 1
hg38_v1_chr12_+_55681711_55681748	0.314024	HOXD9	ENST00000394252.4|METTL7B|ENSG00000170439.7|methyltransferase like 7B
hg38_v1_chr17_-_64263221_64263311	0.311678	HOXD9	ENST00000258991.7|TEX2|ENSG00000136478.8|testis expressed 2	ENST00000583738.1|TEX2|ENSG00000136478.8|testis expressed 2	ENST00000584379.6|TEX2|ENSG00000136478.8|testis expressed 2
hg38_v1_chr4_-_144019287_144019388	0.307207	HOXD9	ENST00000638448.1|GYPB|ENSG00000250361.9|glycophorin B (MNS blood group)	ENST00000513128.5|GYPB|ENSG00000250361.9|glycophorin B (MNS blood group)	ENST00000506516.6|GYPB|ENSG00000250361.9|glycophorin B (MNS blood group)	ENST00000429670.3|GYPB|ENSG00000250361.9|glycophorin B (MNS blood group)	ENST00000502664.6|GYPB|ENSG00000250361.9|glycophorin B (MNS blood group)
hg38_v1_chr4_+_15339818_15339962	0.307161	HOXD9	ENST00000397700.6|C1QTNF7|ENSG00000163145.13|C1q and TNF related 7	ENST00000295297.4|C1QTNF7|ENSG00000163145.13|C1q and TNF related 7
hg38_v1_chr2_+_11534039_11534054	0.303259	HOXD9	ENST00000381486.7|GREB1|ENSG00000196208.14|growth regulating estrogen receptor binding 1
hg38_v1_chrX_-_131289266_131289314	0.302816	HOXD9	ENST00000370910.5|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1	ENST00000370901.4|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1	ENST00000361420.8|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1	ENST00000370903.8|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1
hg38_v1_chr3_+_159069252_159069285	0.301922	HOXD9	ENST00000640015.1|IQCJ-SCHIP1|ENSG00000283154.2|IQCJ-SCHIP1 readthrough	ENST00000476809.7|IQCJ-SCHIP1|ENSG00000283154.2|IQCJ-SCHIP1 readthrough	ENST00000485419.7|IQCJ-SCHIP1|ENSG00000283154.2|IQCJ-SCHIP1 readthrough
hg38_v1_chr8_-_25424260_25424264	0.301008	HOXD9	ENST00000421054.7|GNRH1|ENSG00000147437.10|gonadotropin releasing hormone 1
hg38_v1_chr12_-_95116967_95116977	0.298652	HOXD9	ENST00000551521.5|FGD6|ENSG00000180263.14|FYVE, RhoGEF and PH domain containing 6
hg38_v1_chr4_+_70383123_70383137	0.290629	HOXD9	ENST00000304915.8|SMR3B|ENSG00000171201.12|submaxillary gland androgen regulated protein 3B
hg38_v1_chr7_+_90383672_90383721	0.290281	HOXD9	ENST00000416322.5|CLDN12|ENSG00000157224.16|claudin 12
hg38_v1_chr5_+_69565122_69565122	0.289586	HOXD9	ENST00000507595.1|GTF2H2C|ENSG00000183474.16|GTF2H2 family member C
hg38_v1_chr3_-_157503339_157503374	0.285745	HOXD9	ENST00000392833.6|VEPH1|ENSG00000197415.12|ventricular zone expressed PH domain containing 1
hg38_v1_chr19_-_49896868_49896898	0.284543	HOXD9	ENST00000593956.5|IL4I1|ENSG00000104951.16|interleukin 4 induced 1	ENST00000391826.7|IL4I1|ENSG00000104951.16|interleukin 4 induced 1
hg38_v1_chr5_+_141199555_141199636	0.283866	HOXD9	ENST00000624887.1|PCDHB11|ENSG00000197479.7|protocadherin beta 11	ENST00000354757.5|PCDHB11|ENSG00000197479.7|protocadherin beta 11
hg38_v1_chr8_+_78591222_78591241	0.279666	HOXD9	ENST00000518467.1|PKIA|ENSG00000171033.13|cAMP-dependent protein kinase inhibitor alpha
hg38_v1_chr6_-_39431313_39431396	0.279159	HOXD9	ENST00000229913.9|KIF6|ENSG00000164627.18|kinesin family member 6	ENST00000394362.5|KIF6|ENSG00000164627.18|kinesin family member 6
hg38_v1_chr3_-_157160751_157160772	0.274833	HOXD9	ENST00000461804.5|CCNL1|ENSG00000163660.12|cyclin L1
hg38_v1_chr1_-_48472166_48472235	0.274416	HOXD9	ENST00000371847.8|SPATA6|ENSG00000132122.12|spermatogenesis associated 6	ENST00000396199.7|SPATA6|ENSG00000132122.12|spermatogenesis associated 6
hg38_v1_chr6_-_69699124_69699176	0.265709	HOXD9	ENST00000651675.1|LMBRD1|ENSG00000168216.13|LMBR1 domain containing 1
hg38_v1_chr15_+_58138368_58138390	0.26514	HOXD9	ENST00000219919.9|AQP9|ENSG00000103569.10|aquaporin 9	ENST00000536493.1|AQP9|ENSG00000103569.10|aquaporin 9
hg38_v1_chr4_-_69495897_69495914	0.258875	HOXD9	ENST00000305107.7|UGT2B4|ENSG00000156096.14|UDP glucuronosyltransferase family 2 member B4	ENST00000639621.1|UGT2B4|ENSG00000156096.14|UDP glucuronosyltransferase family 2 member B4
hg38_v1_chr11_-_105035113_105035250	0.257943	HOXD9	ENST00000526568.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000531166.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000534497.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000527979.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000533400.6|CASP1|ENSG00000137752.24|caspase 1	ENST00000528974.1|CASP1|ENSG00000137752.24|caspase 1	ENST00000525825.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000353247.9|CASP1|ENSG00000137752.24|caspase 1	ENST00000446369.5|CASP1|ENSG00000137752.24|caspase 1	ENST00000436863.7|CASP1|ENSG00000137752.24|caspase 1
hg38_v1_chr11_+_117203135_117203144	0.257013	HOXD9	ENST00000529622.1|TAGLN|ENSG00000149591.17|transgelin
hg38_v1_chr3_+_107599309_107599325	0.252432	HOXD9	ENST00000406780.5|BBX|ENSG00000114439.19|BBX high mobility group box domain containing
hg38_v1_chr22_+_50170720_50170771	0.246522	HOXD9	ENST00000159647.9|PANX2|ENSG00000073150.14|pannexin 2	ENST00000395842.3|PANX2|ENSG00000073150.14|pannexin 2
hg38_v1_chr1_+_86547070_86547084	0.243713	HOXD9	ENST00000370563.3|CLCA4|ENSG00000016602.9|chloride channel accessory 4
hg38_v1_chr5_+_141364153_141364205	0.243078	HOXD9	ENST00000518069.2|PCDHGA5|ENSG00000253485.3|protocadherin gamma subfamily A, 5
hg38_v1_chr9_-_28670285_28670286	0.242776	HOXD9	ENST00000379992.6|LINGO2|ENSG00000174482.10|leucine rich repeat and Ig domain containing 2	ENST00000308675.5|LINGO2|ENSG00000174482.10|leucine rich repeat and Ig domain containing 2	ENST00000613945.3|LINGO2|ENSG00000174482.10|leucine rich repeat and Ig domain containing 2
hg38_v1_chr20_+_6007245_6007264	0.239555	HOXD9	ENST00000378868.4|CRLS1|ENSG00000088766.12|cardiolipin synthase 1
hg38_v1_chr16_+_21612637_21612700	0.237905	HOXD9	ENST00000568826.1|METTL9|ENSG00000197006.14|methyltransferase like 9
hg38_v1_chrX_-_77895546_77895593	0.232501	HOXD9	ENST00000358075.11|MAGT1|ENSG00000102158.21|magnesium transporter 1
hg38_v1_chr3_-_157503574_157503626	0.230603	HOXD9	ENST00000494677.5|VEPH1|ENSG00000197415.12|ventricular zone expressed PH domain containing 1	ENST00000468233.5|VEPH1|ENSG00000197415.12|ventricular zone expressed PH domain containing 1
hg38_v1_chr9_-_69014090_69014124	0.226747	HOXD9	ENST00000377276.5|PRKACG|ENSG00000165059.8|protein kinase cAMP-activated catalytic subunit gamma
hg38_v1_chr2_-_55419821_55419895	0.225851	HOXD9	ENST00000644630.1|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000471947.2|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000436346.7|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000642200.1|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000413716.7|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000263630.13|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A	ENST00000645072.1|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A
hg38_v1_chr2_+_233760265_233760288	0.219592	HOXD9	ENST00000305208.10|UGT1A1|ENSG00000241635.8|UDP glucuronosyltransferase family 1 member A1	ENST00000360418.4|UGT1A1|ENSG00000241635.8|UDP glucuronosyltransferase family 1 member A1
hg38_v1_chr1_+_207325629_207325649	0.217858	HOXD9	ENST00000618707.2|CD55|ENSG00000196352.16|CD55 molecule (Cromer blood group)
hg38_v1_chr4_-_83114715_83114744	0.217279	HOXD9	ENST00000426923.2|PLAC8|ENSG00000145287.11|placenta associated 8	ENST00000311507.9|PLAC8|ENSG00000145287.11|placenta associated 8	ENST00000509973.5|PLAC8|ENSG00000145287.11|placenta associated 8
hg38_v1_chr19_-_19628512_19628557	0.21702	HOXD9	ENST00000588461.1|LPAR2|ENSG00000064547.14|lysophosphatidic acid receptor 2
hg38_v1_chr15_-_55270383_55270419	0.213632	HOXD9	ENST00000396307.6|RAB27A|ENSG00000069974.16|RAB27A, member RAS oncogene family
hg38_v1_chr4_+_174918400_174918416	0.212475	HOXD9	ENST00000404450.8|ADAM29|ENSG00000168594.15|ADAM metallopeptidase domain 29	ENST00000514159.1|ADAM29|ENSG00000168594.15|ADAM metallopeptidase domain 29
hg38_v1_chr4_-_139084191_139084257	0.211654	HOXD9	ENST00000512627.1|ELF2|ENSG00000109381.20|E74 like ETS transcription factor 2
hg38_v1_chr10_+_84425148_84425184	0.208396	HOXD9	ENST00000493409.5|CCSER2|ENSG00000107771.17|coiled-coil serine rich protein 2
hg38_v1_chr1_+_173635332_173635342	0.207164	HOXD9	ENST00000417563.3|TEX50|ENSG00000232113.3|testis expressed 50
hg38_v1_chrX_-_77895414_77895467	0.203855	HOXD9	ENST00000618282.5|MAGT1|ENSG00000102158.21|magnesium transporter 1	ENST00000373336.3|MAGT1|ENSG00000102158.21|magnesium transporter 1
hg38_v1_chr3_+_159273235_159273294	0.203702	HOXD9	ENST00000638749.1|IQCJ-SCHIP1|ENSG00000283154.2|IQCJ-SCHIP1 readthrough
hg38_v1_chr15_-_45201094_45201175	0.202721	HOXD9	ENST00000561278.1|SHF|ENSG00000138606.19|Src homology 2 domain containing F	ENST00000290894.12|SHF|ENSG00000138606.19|Src homology 2 domain containing F
hg38_v1_chr3_+_141262614_141262666	0.202543	HOXD9	ENST00000504264.5|PXYLP1|ENSG00000155893.13|2-phosphoxylose phosphatase 1
hg38_v1_chr21_-_29061351_29061376	0.201417	HOXD9	ENST00000432178.5|CCT8|ENSG00000156261.13|chaperonin containing TCP1 subunit 8
hg38_v1_chr6_+_131637296_131637310	0.201149	HOXD9	ENST00000358229.6|ENPP3|ENSG00000154269.15|ectonucleotide pyrophosphatase/phosphodiesterase 3	ENST00000357639.8|ENPP3|ENSG00000154269.15|ectonucleotide pyrophosphatase/phosphodiesterase 3
hg38_v1_chr2_-_55296361_55296455	0.195742	HOXD9	ENST00000647547.1|CCDC88A|ENSG00000115355.17|coiled-coil domain containing 88A
hg38_v1_chr15_-_19988117_19988117	0.195573	HOXD9	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg38_v1_chr2_+_100974849_100974877	0.194212	HOXD9	ENST00000450763.1|NPAS2|ENSG00000170485.17|neuronal PAS domain protein 2
hg38_v1_chr9_+_20927765_20927857	0.193697	HOXD9	ENST00000603044.5|FOCAD|ENSG00000188352.12|focadhesin	ENST00000604254.5|FOCAD|ENSG00000188352.12|focadhesin
hg38_v1_chr5_+_75653161_75653161	0.191611	HOXD9	ENST00000672390.1|ANKDD1B|ENSG00000189045.15|ankyrin repeat and death domain containing 1B
hg38_v1_chr10_+_113751627_113751638	0.19063	HOXD9	ENST00000652564.1|PLEKHS1|ENSG00000148735.15|pleckstrin homology domain containing S1
hg38_v1_chr1_+_192158448_192158483	0.190489	HOXD9	ENST00000367460.4|RGS18|ENSG00000150681.10|regulator of G protein signaling 18
hg38_v1_chr14_+_93918889_93918912	0.189823	HOXD9	ENST00000557719.1|FAM181A|ENSG00000140067.6|family with sequence similarity 181 member A	ENST00000267594.5|FAM181A|ENSG00000140067.6|family with sequence similarity 181 member A
hg38_v1_chr14_+_37795308_37795308	0.189789	HOXD9	ENST00000267368.11|TTC6|ENSG00000139865.16|tetratricopeptide repeat domain 6	ENST00000382320.4|TTC6|ENSG00000139865.16|tetratricopeptide repeat domain 6
hg38_v1_chr6_-_130890393_130890424	0.189641	HOXD9	ENST00000456097.6|EPB41L2|ENSG00000079819.19|erythrocyte membrane protein band 4.1 like 2
hg38_v1_chr5_+_126631680_126631726	0.188827	HOXD9	ENST00000357147.4|TEX43|ENSG00000196900.5|testis expressed 43
hg38_v1_chrX_+_48761743_48761763	0.187006	HOXD9	ENST00000303227.11|GLOD5|ENSG00000171433.12|glyoxalase domain containing 5
hg38_v1_chr8_-_42541042_42541054	0.185353	HOXD9	ENST00000518717.1|SLC20A2|ENSG00000168575.10|solute carrier family 20 member 2
hg38_v1_chr3_-_108058361_108058389	0.183159	HOXD9	ENST00000398258.7|CD47|ENSG00000196776.17|CD47 molecule
hg38_v1_chrX_-_111270474_111270514	0.182875	HOXD9	ENST00000324068.2|CAPN6|ENSG00000077274.9|calpain 6
hg38_v1_chr20_-_31390580_31390598	0.181083	HOXD9	ENST00000339144.3|DEFB119|ENSG00000180483.7|defensin beta 119	ENST00000376321.4|DEFB119|ENSG00000180483.7|defensin beta 119
hg38_v1_chr9_+_133376334_133376374	0.180139	HOXD9	ENST00000371957.4|STKLD1|ENSG00000198870.8|serine/threonine kinase like domain containing 1
hg38_v1_chr22_+_19479457_19479481	0.178882	HOXD9	ENST00000407835.6|CDC45|ENSG00000093009.11|cell division cycle 45	ENST00000455750.6|CDC45|ENSG00000093009.11|cell division cycle 45
hg38_v1_chr4_-_36243939_36243979	0.178531	HOXD9	ENST00000506189.1|ARAP2|ENSG00000047365.12|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
hg38_v1_chr4_+_74308463_74308479	0.178477	HOXD9	ENST00000413830.6|EPGN|ENSG00000182585.10|epithelial mitogen
hg38_v1_chr4_-_69495861_69495882	0.175845	HOXD9	ENST00000512583.5|UGT2B4|ENSG00000156096.14|UDP glucuronosyltransferase family 2 member B4
hg38_v1_chr5_+_142907573_142907582	0.174089	HOXD9	ENST00000469131.6|ARHGAP26|ENSG00000145819.18|Rho GTPase activating protein 26
hg38_v1_chr11_-_30992665_30992686	0.168822	HOXD9	ENST00000406071.6|DCDC1|ENSG00000170959.15|doublecortin domain containing 1
hg38_v1_chr8_+_36784324_36784384	0.166659	HOXD9	ENST00000523973.5|KCNU1|ENSG00000215262.8|potassium calcium-activated channel subfamily U member 1	ENST00000399881.8|KCNU1|ENSG00000215262.8|potassium calcium-activated channel subfamily U member 1
hg38_v1_chr12_+_51424802_51424879	0.162531	HOXD9	ENST00000453097.7|SLC4A8|ENSG00000050438.17|solute carrier family 4 member 8
hg38_v1_chr6_+_10528326_10528356	0.161205	HOXD9	ENST00000379597.7|GCNT2|ENSG00000111846.19|glucosaminyl (N-acetyl) transferase 2 (I blood group)
hg38_v1_chr14_+_23240346_23240346	0.157697	HOXD9	ENST00000430154.6|RNF212B|ENSG00000215277.8|ring finger protein 212B
hg38_v1_chr11_+_118530990_118531088	0.15655	HOXD9	ENST00000411589.6|TMEM25|ENSG00000149582.16|transmembrane protein 25	ENST00000359862.8|TMEM25|ENSG00000149582.16|transmembrane protein 25	ENST00000442938.6|TMEM25|ENSG00000149582.16|transmembrane protein 25
hg38_v1_chr3_+_107645922_107645946	0.15539	HOXD9	ENST00000449271.5|BBX|ENSG00000114439.19|BBX high mobility group box domain containing	ENST00000425868.5|BBX|ENSG00000114439.19|BBX high mobility group box domain containing	ENST00000449213.5|BBX|ENSG00000114439.19|BBX high mobility group box domain containing
hg38_v1_chr1_-_212847649_212847649	0.151613	HOXD9	ENST00000332912.3|SPATA45|ENSG00000185523.6|spermatogenesis associated 45
hg38_v1_chr2_+_1414382_1414411	0.150668	HOXD9	ENST00000423320.5|TPO|ENSG00000115705.22|thyroid peroxidase	ENST00000346956.7|TPO|ENSG00000115705.22|thyroid peroxidase	ENST00000382198.5|TPO|ENSG00000115705.22|thyroid peroxidase
hg38_v1_chr14_-_24442662_24442696	0.149072	HOXD9	ENST00000554698.5|SDR39U1|ENSG00000100445.18|short chain dehydrogenase/reductase family 39U member 1
hg38_v1_chr19_-_50639827_50639886	0.147561	HOXD9	ENST00000593901.5|SYT3|ENSG00000213023.11|synaptotagmin 3	ENST00000600079.6|SYT3|ENSG00000213023.11|synaptotagmin 3
hg38_v1_chr17_-_42112674_42112735	0.147468	HOXD9	ENST00000251642.8|DHX58|ENSG00000108771.13|DExH-box helicase 58	ENST00000591220.5|DHX58|ENSG00000108771.13|DExH-box helicase 58
hg38_v1_chr20_-_53995929_53996008	0.147411	HOXD9	ENST00000422805.1|BCAS1|ENSG00000064787.13|brain enriched myelin associated protein 1
hg38_v1_chr1_+_198638968_198639120	0.147397	HOXD9	ENST00000348564.11|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000530727.5|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000442510.8|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000645247.1|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000367367.8|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000367364.5|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C	ENST00000413409.6|PTPRC|ENSG00000081237.20|protein tyrosine phosphatase receptor type C
hg38_v1_chr14_+_80955043_80955044	0.146588	HOXD9	ENST00000541158.6|TSHR|ENSG00000165409.18|thyroid stimulating hormone receptor
hg38_v1_chr18_+_58196736_58196872	0.146361	HOXD9	ENST00000675221.1|NEDD4L|ENSG00000049759.20|NEDD4 like E3 ubiquitin protein ligase
hg38_v1_chrX_-_139708190_139708227	0.14439	HOXD9	ENST00000414978.5|MCF2|ENSG00000101977.21|MCF.2 cell line derived transforming sequence	ENST00000519895.5|MCF2|ENSG00000101977.21|MCF.2 cell line derived transforming sequence
hg38_v1_chr2_+_143129379_143129429	0.142104	HOXD9	ENST00000295095.11|ARHGAP15|ENSG00000075884.14|Rho GTPase activating protein 15
hg38_v1_chr16_-_21431553_21431553	0.141454	HOXD9	ENST00000534903.1|NPIPB3|ENSG00000169246.16|nuclear pore complex interacting protein family member B3
hg38_v1_chr5_+_141121793_141121825	0.139548	HOXD9	ENST00000194152.4|PCDHB4|ENSG00000081818.4|protocadherin beta 4
hg38_v1_chr19_+_15082211_15082211	0.137311	HOXD9	ENST00000641398.1|OR1I1|ENSG00000094661.3|olfactory receptor family 1 subfamily I member 1
hg38_v1_chr2_+_186694007_186694068	0.133225	HOXD9	ENST00000304698.10|FAM171B|ENSG00000144369.13|family with sequence similarity 171 member B
hg38_v1_chr2_+_142877653_142877671	0.131027	HOXD9	ENST00000375773.6|KYNU|ENSG00000115919.15|kynureninase	ENST00000409512.5|KYNU|ENSG00000115919.15|kynureninase	ENST00000264170.9|KYNU|ENSG00000115919.15|kynureninase	ENST00000410015.6|KYNU|ENSG00000115919.15|kynureninase
hg38_v1_chr11_+_124012997_124012997	0.129115	HOXD9	ENST00000641521.1|OR10G4|ENSG00000254737.3|olfactory receptor family 10 subfamily G member 4	ENST00000641722.1|OR10G4|ENSG00000254737.3|olfactory receptor family 10 subfamily G member 4
hg38_v1_chr10_+_84424919_84424958	0.128199	HOXD9	ENST00000543283.2|CCSER2|ENSG00000107771.17|coiled-coil serine rich protein 2	ENST00000494586.5|CCSER2|ENSG00000107771.17|coiled-coil serine rich protein 2
hg38_v1_chr13_-_44161257_44161257	0.128113	HOXD9	ENST00000400419.2|SMIM2|ENSG00000139656.7|small integral membrane protein 2
hg38_v1_chr4_-_174263080_174263100	0.126462	HOXD9	ENST00000615392.4|FBXO8|ENSG00000164117.14|F-box protein 8
hg38_v1_chr10_-_48251757_48251792	0.126453	HOXD9	ENST00000305531.3|FRMPD2|ENSG00000170324.21|FERM and PDZ domain containing 2
hg38_v1_chr12_+_75334675_75334698	0.123772	HOXD9	ENST00000312442.2|GLIPR1L1|ENSG00000173401.10|GLIPR1 like 1
hg38_v1_chr18_-_12656716_12656736	0.121666	HOXD9	ENST00000462226.1|SPIRE1|ENSG00000134278.15|spire type actin nucleation factor 1	ENST00000497844.6|SPIRE1|ENSG00000134278.15|spire type actin nucleation factor 1	ENST00000309836.9|SPIRE1|ENSG00000134278.15|spire type actin nucleation factor 1	ENST00000453447.6|SPIRE1|ENSG00000134278.15|spire type actin nucleation factor 1
hg38_v1_chr1_-_151428028_151428137	0.120875	HOXD9	ENST00000594456.1|POGZ|ENSG00000143442.22|pogo transposable element derived with ZNF domain
hg38_v1_chrX_-_131289412_131289463	0.118516	HOXD9	ENST00000652189.1|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1	ENST00000651556.1|IGSF1|ENSG00000147255.19|immunoglobulin superfamily member 1
hg38_v1_chr17_+_7252502_7252623	0.117752	HOXD9	ENST00000570322.5|ELP5|ENSG00000170291.15|elongator acetyltransferase complex subunit 5	ENST00000576496.5|ELP5|ENSG00000170291.15|elongator acetyltransferase complex subunit 5	ENST00000574841.2|ELP5|ENSG00000170291.15|elongator acetyltransferase complex subunit 5
hg38_v1_chr11_+_63838902_63838946	0.114834	HOXD9	ENST00000377810.8|MARK2|ENSG00000072518.22|microtubule affinity regulating kinase 2
hg38_v1_chr2_-_201769759_201769828	0.114699	HOXD9	ENST00000680163.1|ALS2|ENSG00000003393.16|alsin Rho guanine nucleotide exchange factor ALS2	ENST00000680188.1|ALS2|ENSG00000003393.16|alsin Rho guanine nucleotide exchange factor ALS2	ENST00000679550.1|ALS2|ENSG00000003393.16|alsin Rho guanine nucleotide exchange factor ALS2
hg38_v1_chr4_-_67883987_67884007	0.114586	HOXD9	ENST00000283916.11|TMPRSS11D|ENSG00000153802.12|transmembrane serine protease 11D
hg38_v1_chr13_+_77741212_77741225	0.111817	HOXD9	ENST00000441784.5|SLAIN1|ENSG00000139737.22|SLAIN motif family member 1
hg38_v1_chr12_-_9999176_9999300	0.111759	HOXD9	ENST00000298527.10|CLEC1B|ENSG00000165682.14|C-type lectin domain family 1 member B	ENST00000348658.4|CLEC1B|ENSG00000165682.14|C-type lectin domain family 1 member B
hg38_v1_chr2_-_70190694_70190735	0.111237	HOXD9	ENST00000457952.5|C2orf42|ENSG00000115998.8|chromosome 2 open reading frame 42
hg38_v1_chr4_+_70430487_70430497	0.111067	HOXD9	ENST00000413702.5|MUC7|ENSG00000171195.11|mucin 7, secreted
hg38_v1_chr15_+_57706725_57706737	0.109684	HOXD9	ENST00000380557.4|POLR2M|ENSG00000255529.9|RNA polymerase II subunit M	ENST00000649091.1|POLR2M|ENSG00000255529.9|RNA polymerase II subunit M
hg38_v1_chr4_-_149815826_149815859	0.108897	HOXD9	ENST00000636793.2|IQCM|ENSG00000234828.9|IQ motif containing M	ENST00000636414.1|IQCM|ENSG00000234828.9|IQ motif containing M
hg38_v1_chr6_+_96563117_96563145	0.108076	HOXD9	ENST00000450218.6|FHL5|ENSG00000112214.11|four and a half LIM domains 5
hg38_v1_chr10_-_114144599_114144619	0.107408	HOXD9	ENST00000428953.1|CCDC186|ENSG00000165813.20|coiled-coil domain containing 186
hg38_v1_chr8_+_73991345_73991426	0.106541	HOXD9	ENST00000284818.7|LY96|ENSG00000154589.7|lymphocyte antigen 96	ENST00000518893.1|LY96|ENSG00000154589.7|lymphocyte antigen 96
hg38_v1_chr2_+_89985922_89985922	0.104258	HOXD9	ENST00000390268.2|IGKV2D-26|ENSG00000211623.2|immunoglobulin kappa variable 2D-26
hg38_v1_chr6_-_49964160_49964166	0.103668	HOXD9	ENST00000322066.4|DEFB114|ENSG00000177684.4|defensin beta 114
hg38_v1_chr1_+_215573775_215573795	0.100212	HOXD9	ENST00000448333.1|KCTD3|ENSG00000136636.13|potassium channel tetramerization domain containing 3
hg38_v1_chr12_+_75334655_75334674	0.0996265	HOXD9	ENST00000378695.9|GLIPR1L1|ENSG00000173401.10|GLIPR1 like 1
hg38_v1_chrX_-_15493234_15493340	0.098973	HOXD9	ENST00000380420.10|PIR|ENSG00000087842.11|pirin
hg38_v1_chr11_-_8964927_8965011	0.0976546	HOXD9	ENST00000525069.5|TMEM9B|ENSG00000175348.11|TMEM9 domain family member B
hg38_v1_chr11_+_70078573_70078599	0.097392	HOXD9	ENST00000531604.5|ANO1|ENSG00000131620.17|anoctamin 1
hg38_v1_chr4_+_25914171_25914271	0.0956626	HOXD9	ENST00000506197.2|SMIM20|ENSG00000250317.8|small integral membrane protein 20
hg38_v1_chr2_+_24793098_24793171	0.0950156	HOXD9	ENST00000473706.5|CENPO|ENSG00000138092.11|centromere protein O
hg38_v1_chr14_-_60724300_60724362	0.0936392	HOXD9	ENST00000556952.3|SIX4|ENSG00000100625.9|SIX homeobox 4	ENST00000216513.5|SIX4|ENSG00000100625.9|SIX homeobox 4
hg38_v1_chr3_-_132684685_132684770	0.0929714	HOXD9	ENST00000512094.5|NPHP3|ENSG00000113971.21|nephrocystin 3	ENST00000632629.1|NPHP3-ACAD11|ENSG00000274810.4|NPHP3-ACAD11 readthrough (NMD candidate)
hg38_v1_chr12_-_111485744_111485836	0.092162	HOXD9	ENST00000643474.1|ATXN2|ENSG00000204842.18|ataxin 2	ENST00000643694.1|ATXN2|ENSG00000204842.18|ataxin 2
hg38_v1_chr15_+_58138169_58138227	0.0912027	HOXD9	ENST00000558772.5|AQP9|ENSG00000103569.10|aquaporin 9
hg38_v1_chr15_-_53733103_53733183	0.0906002	HOXD9	ENST00000559418.5|WDR72|ENSG00000166415.15|WD repeat domain 72
hg38_v1_chr5_+_142907322_142907354	0.0892632	HOXD9	ENST00000451259.1|ARHGAP26|ENSG00000145819.18|Rho GTPase activating protein 26
hg38_v1_chr1_-_235650748_235650767	0.0892529	HOXD9	ENST00000450593.5|GNG4|ENSG00000168243.11|G protein subunit gamma 4	ENST00000366598.8|GNG4|ENSG00000168243.11|G protein subunit gamma 4
hg38_v1_chr2_+_54115396_54115411	0.0874255	HOXD9	ENST00000406041.5|ACYP2|ENSG00000170634.13|acylphosphatase 2
hg38_v1_chr5_+_141364231_141364246	0.0857595	HOXD9	ENST00000611914.1|PCDHGA5|ENSG00000253485.3|protocadherin gamma subfamily A, 5
hg38_v1_chr5_-_177780633_177780676	0.0808287	HOXD9	ENST00000513554.5|FAM153A|ENSG00000170074.19|family with sequence similarity 153 member A	ENST00000440605.7|FAM153A|ENSG00000170074.19|family with sequence similarity 153 member A
hg38_v1_chr12_+_110280602_110280756	0.080674	HOXD9	ENST00000552636.2|ATP2A2|ENSG00000174437.18|ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
hg38_v1_chr3_-_196515315_196515353	0.076224	HOXD9	ENST00000397537.3|SMCO1|ENSG00000214097.5|single-pass membrane protein with coiled-coil domains 1
hg38_v1_chr4_-_39638893_39638908	0.0758968	HOXD9	ENST00000511809.5|SMIM14|ENSG00000163683.12|small integral membrane protein 14	ENST00000505729.1|SMIM14|ENSG00000163683.12|small integral membrane protein 14
hg38_v1_chr16_-_18900044_18900097	0.0751607	HOXD9	ENST00000565224.5|SMG1|ENSG00000157106.17|SMG1 nonsense mediated mRNA decay associated PI3K related kinase	ENST00000330588.4|SMG1|ENSG00000157106.17|SMG1 nonsense mediated mRNA decay associated PI3K related kinase
hg38_v1_chr18_+_63887698_63887759	0.0737087	HOXD9	ENST00000457692.5|SERPINB2|ENSG00000197632.9|serpin family B member 2	ENST00000299502.9|SERPINB2|ENSG00000197632.9|serpin family B member 2	ENST00000413956.5|SERPINB2|ENSG00000197632.9|serpin family B member 2
hg38_v1_chr3_+_107645836_107645890	0.0704512	HOXD9	ENST00000413213.5|BBX|ENSG00000114439.19|BBX high mobility group box domain containing
hg38_v1_chr8_+_106726115_106726185	0.0700088	HOXD9	ENST00000521592.5|OXR1|ENSG00000164830.19|oxidation resistance 1
hg38_v1_chr12_-_91004965_91004991	0.0676092	HOXD9	ENST00000261172.8|EPYC|ENSG00000083782.8|epiphycan
hg38_v1_chr15_+_66504959_66505167	0.062122	HOXD9	ENST00000535141.6|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein	ENST00000613446.4|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein	ENST00000446801.6|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein
hg38_v1_chr6_-_17706852_17706939	0.0614431	HOXD9	ENST00000262077.3|NUP153|ENSG00000124789.12|nucleoporin 153
hg38_v1_chr18_+_63897152_63897177	0.0595937	HOXD9	ENST00000397996.6|SERPINB10|ENSG00000242550.6|serpin family B member 10	ENST00000418725.1|SERPINB10|ENSG00000242550.6|serpin family B member 10
hg38_v1_chr14_-_80959484_80959514	0.0592703	HOXD9	ENST00000555529.5|CEP128|ENSG00000100629.17|centrosomal protein 128	ENST00000556042.5|CEP128|ENSG00000100629.17|centrosomal protein 128	ENST00000556981.5|CEP128|ENSG00000100629.17|centrosomal protein 128
hg38_v1_chr6_+_32844789_32844854	0.0574459	HOXD9	ENST00000414474.5|PSMB9|ENSG00000240065.8|proteasome 20S subunit beta 9
hg38_v1_chr8_+_54616078_54616114	0.0567235	HOXD9	ENST00000220676.2|RP1|ENSG00000104237.11|RP1 axonemal microtubule associated
hg38_v1_chr1_-_114581589_114581633	0.0556732	HOXD9	ENST00000369541.4|BCAS2|ENSG00000116752.6|BCAS2 pre-mRNA processing factor
hg38_v1_chr6_+_149218631_149218698	0.0542575	HOXD9	ENST00000606202.1|TAB2|ENSG00000055208.19|TGF-beta activated kinase 1 (MAP3K7) binding protein 2	ENST00000445901.1|ENSG00000228408.6|ENSG00000228408.6|novel transcript
hg38_v1_chr4_+_68447453_68447476	0.0524579	HOXD9	ENST00000305363.9|TMPRSS11E|ENSG00000087128.10|transmembrane serine protease 11E
hg38_v1_chr6_+_24774925_24775014	0.0521649	HOXD9	ENST00000356509.7|GMNN|ENSG00000112312.10|geminin DNA replication inhibitor	ENST00000230056.8|GMNN|ENSG00000112312.10|geminin DNA replication inhibitor
hg38_v1_chr8_-_65789084_65789097	0.0507332	HOXD9	ENST00000379419.8|PDE7A|ENSG00000205268.11|phosphodiesterase 7A
hg38_v1_chr14_-_24442765_24442858	0.0491033	HOXD9	ENST00000555365.5|SDR39U1|ENSG00000100445.18|short chain dehydrogenase/reductase family 39U member 1	ENST00000399395.8|SDR39U1|ENSG00000100445.18|short chain dehydrogenase/reductase family 39U member 1	ENST00000553930.5|SDR39U1|ENSG00000100445.18|short chain dehydrogenase/reductase family 39U member 1
hg38_v1_chr17_-_49646581_49646630	0.0489043	HOXD9	ENST00000510476.5|SPOP|ENSG00000121067.19|speckle type BTB/POZ protein	ENST00000503676.5|SPOP|ENSG00000121067.19|speckle type BTB/POZ protein
hg38_v1_chr13_-_99307387_99307406	0.0478851	HOXD9	ENST00000376414.5|GPR183|ENSG00000169508.7|G protein-coupled receptor 183
hg38_v1_chr1_-_86383078_86383196	0.0462784	HOXD9	ENST00000460698.6|ODF2L|ENSG00000122417.15|outer dense fiber of sperm tails 2 like
hg38_v1_chr11_+_5754243_5754243	0.0423549	HOXD9	ENST00000641350.2|OR52N4|ENSG00000181074.5|olfactory receptor family 52 subfamily N member 4
hg38_v1_chr17_-_41168219_41168224	0.0411048	HOXD9	ENST00000391356.4|KRTAP4-3|ENSG00000196156.5|keratin associated protein 4-3
hg38_v1_chr18_-_5396265_5396332	0.0410495	HOXD9	ENST00000579951.2|EPB41L3|ENSG00000082397.18|erythrocyte membrane protein band 4.1 like 3
hg38_v1_chr9_-_123184233_123184310	0.0366115	HOXD9	ENST00000447404.6|STRBP|ENSG00000165209.19|spermatid perinuclear RNA binding protein
hg38_v1_chr7_-_111392915_111392930	0.0363679	HOXD9	ENST00000450877.5|IMMP2L|ENSG00000184903.10|inner mitochondrial membrane peptidase subunit 2
hg38_v1_chr7_-_28180735_28180818	0.0341238	HOXD9	ENST00000283928.10|JAZF1|ENSG00000153814.13|JAZF zinc finger 1
hg38_v1_chr11_-_790062_790128	0.0336302	HOXD9	ENST00000330106.5|CEND1|ENSG00000184524.6|cell cycle exit and neuronal differentiation 1
hg38_v1_chr6_+_130018565_130018600	0.0310828	HOXD9	ENST00000361794.7|L3MBTL3|ENSG00000198945.8|L3MBTL histone methyl-lysine binding protein 3	ENST00000526087.5|L3MBTL3|ENSG00000198945.8|L3MBTL histone methyl-lysine binding protein 3	ENST00000533560.5|L3MBTL3|ENSG00000198945.8|L3MBTL histone methyl-lysine binding protein 3
hg38_v1_chr1_-_148152272_148152322	0.0301259	HOXD9	ENST00000682118.1|NBPF11|ENSG00000263956.7|NBPF member 11	ENST00000615281.4|NBPF11|ENSG00000263956.7|NBPF member 11
hg38_v1_chr6_-_28252246_28252275	0.0293516	HOXD9	ENST00000377294.3|ZKSCAN4|ENSG00000187626.9|zinc finger with KRAB and SCAN domains 4
hg38_v1_chr4_+_168654724_168654750	0.0277313	HOXD9	ENST00000503457.1|PALLD|ENSG00000129116.19|palladin, cytoskeletal associated protein
hg38_v1_chr7_+_93906557_93906594	0.0274083	HOXD9	ENST00000248572.10|GNGT1|ENSG00000127928.13|G protein subunit gamma transducin 1	ENST00000429473.1|GNGT1|ENSG00000127928.13|G protein subunit gamma transducin 1	ENST00000430875.1|GNGT1|ENSG00000127928.13|G protein subunit gamma transducin 1	ENST00000428834.1|GNGT1|ENSG00000127928.13|G protein subunit gamma transducin 1
hg38_v1_chr8_-_116874746_116874828	0.0271907	HOXD9	ENST00000297338.7|RAD21|ENSG00000164754.15|RAD21 cohesin complex component
hg38_v1_chr7_-_107564261_107564352	0.0214846	HOXD9	ENST00000393603.7|COG5|ENSG00000164597.15|component of oligomeric golgi complex 5
hg38_v1_chrX_+_44844015_44844031	0.0202075	HOXD9	ENST00000339042.6|DUSP21|ENSG00000189037.8|dual specificity phosphatase 21
hg38_v1_chr15_+_66505289_66505346	0.0198729	HOXD9	ENST00000565627.5|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein	ENST00000564179.5|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein	ENST00000307897.10|ZWILCH|ENSG00000174442.12|zwilch kinetochore protein
hg38_v1_chr20_+_19889502_19889583	0.0194818	HOXD9	ENST00000440354.2|RIN2|ENSG00000132669.14|Ras and Rab interactor 2
hg38_v1_chr6_+_155149109_155149155	0.0194174	HOXD9	ENST00000456877.6|TIAM2|ENSG00000146426.19|TIAM Rac1 associated GEF 2	ENST00000528391.6|TIAM2|ENSG00000146426.19|TIAM Rac1 associated GEF 2
hg38_v1_chr10_-_113854368_113854417	0.0168829	HOXD9	ENST00000369305.1|DCLRE1A|ENSG00000198924.8|DNA cross-link repair 1A
hg38_v1_chr3_-_52685531_52685618	0.0162089	HOXD9	ENST00000439181.5|PBRM1|ENSG00000163939.18|polybromo 1	ENST00000449505.5|PBRM1|ENSG00000163939.18|polybromo 1
hg38_v1_chrX_+_88749318_88749318	0.0143772	HOXD9	ENST00000614120.1|CPXCR1|ENSG00000147183.10|CPX chromosome region candidate 1
hg38_v1_chr9_-_146140_146140	0.0130465	HOXD9	ENST00000475990.5|CBWD1|ENSG00000172785.18|COBW domain containing 1
hg38_v1_chr17_+_16381290_16381348	0.0108833	HOXD9	ENST00000395839.5|UBB|ENSG00000170315.14|ubiquitin B	ENST00000395837.1|UBB|ENSG00000170315.14|ubiquitin B
hg38_v1_chr1_+_219173861_219173892	0.0107584	HOXD9	ENST00000366927.3|LYPLAL1|ENSG00000143353.12|lysophospholipase like 1	ENST00000366928.10|LYPLAL1|ENSG00000143353.12|lysophospholipase like 1
hg38_v1_chr7_+_70766172_70766234	0.00927731	HOXD9	ENST00000644949.1|AUTS2|ENSG00000158321.18|activator of transcription and developmental regulator AUTS2
hg38_v1_chr8_+_32614361_32614375	0.00706844	HOXD9	ENST00000522569.1|NRG1|ENSG00000157168.20|neuregulin 1
hg38_v1_chr6_-_2744126_2744148	0.00546558	HOXD9	ENST00000647417.1|MYLK4|ENSG00000145949.11|myosin light chain kinase family member 4
hg38_v1_chr14_+_23185316_23185336	0.0024691	HOXD9	ENST00000399910.5|RNF212B|ENSG00000215277.8|ring finger protein 212B	ENST00000492621.5|RNF212B|ENSG00000215277.8|ring finger protein 212B
hg38_v1_chr1_-_79188390_79188401	0.00195523	HOXD9	ENST00000662530.1|ADGRL4|ENSG00000162618.15|adhesion G protein-coupled receptor L4
hg38_v1_chr4_-_145938775_145938904	0.00192559	HOXD9	ENST00000508784.6|ZNF827|ENSG00000151612.18|zinc finger protein 827
