mm10_v2_chrX_-_61185558_61185558	26.7873	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr9_-_124493793_124493793	2.46307	Aire	ENSMUST00000178787.1|Gm21836|ENSMUSG00000096734.1|predicted gene, 21836
mm10_v2_chr10_-_130280218_130280242	2.05013	Aire	ENSMUST00000061571.3|Neurod4|ENSMUSG00000048015.3|neurogenic differentiation 4
mm10_v2_chr5_-_84417359_84417389	0.956701	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr4_+_63558748_63558859	0.762371	Aire	ENSMUST00000077709.4|6330416G13Rik|ENSMUSG00000045917.11|RIKEN cDNA 6330416G13 gene
mm10_v2_chr2_+_55435918_55435970	0.707768	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr9_+_109054839_109054871	0.680812	Aire	ENSMUST00000154184.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr14_+_21481428_21481439	0.676765	Aire	ENSMUST00000182996.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr17_-_53463315_53463340	0.655959	Aire	ENSMUST00000024725.4|Efhb|ENSMUSG00000023931.4|EF hand domain family, member B
mm10_v2_chr9_+_13662460_13662460	0.645833	Aire	ENSMUST00000177755.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr19_+_46707443_46707511	0.584531	Aire	ENSMUST00000003655.7|As3mt|ENSMUSG00000003559.7|arsenic (+3 oxidation state) methyltransferase
mm10_v2_chr10_+_37139558_37139558	0.580786	Aire	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr12_-_78983476_78983493	0.551622	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr16_-_91618986_91619026	0.544527	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr8_-_4217133_4217168	0.529562	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr6_-_91515878_91515889	0.524994	Aire	ENSMUST00000032182.3|Xpc|ENSMUSG00000030094.7|xeroderma pigmentosum, complementation group C
mm10_v2_chr1_+_65186727_65186750	0.513687	Aire	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr4_-_19570073_19570117	0.509378	Aire	ENSMUST00000029885.4|Cpne3|ENSMUSG00000028228.5|copine III
mm10_v2_chr5_-_50058908_50059010	0.50365	Aire	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr1_+_44119952_44119985	0.499995	Aire	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr7_+_28863831_28863853	0.495053	Aire	ENSMUST00000138272.1|Lgals7|ENSMUSG00000053522.5|lectin, galactose binding, soluble 7
mm10_v2_chr5_+_24100578_24100669	0.451373	Aire	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chr7_-_14562171_14562171	0.43066	Aire	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr9_+_64235201_64235201	0.419223	Aire	ENSMUST00000039011.3|Uchl4|ENSMUSG00000035337.3|ubiquitin carboxyl-terminal esterase L4
mm10_v2_chr15_-_98165560_98165598	0.393649	Aire	ENSMUST00000123922.1|Asb8|ENSMUSG00000048175.7|ankyrin repeat and SOCS box-containing 8
mm10_v2_chr8_-_4216912_4217003	0.376866	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr8_-_31739763_31739763	0.366239	Aire	ENSMUST00000178878.1|Gm5117|ENSMUSG00000093862.1|predicted gene 5117
mm10_v2_chr12_+_4843303_4843419	0.350375	Aire	ENSMUST00000053034.4|BC068281|ENSMUSG00000051721.4|cDNA sequence BC068281
mm10_v2_chr16_-_36874806_36874862	0.31001	Aire	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr7_-_141434532_141434605	0.303976	Aire	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr2_-_134644079_134644109	0.300262	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chrX_-_38576166_38576187	0.295584	Aire	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr5_-_100373484_100373527	0.280304	Aire	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr10_+_52358767_52358767	0.280074	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr4_+_42714926_42714926	0.270106	Aire	ENSMUST00000178454.1|Gm21955|ENSMUSG00000095375.1|predicted gene, 21955
mm10_v2_chr10_+_3872667_3872788	0.262628	Aire	ENSMUST00000136671.1|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENSMUST00000042438.6|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm10_v2_chr10_-_81014902_81014945	0.258389	Aire	ENSMUST00000126317.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000092285.3|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000117805.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr2_-_134644019_134644042	0.249948	Aire	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr15_+_10981747_10981765	0.24822	Aire	ENSMUST00000070877.5|Amacr|ENSMUSG00000022244.6|alpha-methylacyl-CoA racemase
mm10_v2_chrX_-_38576189_38576204	0.245171	Aire	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr2_-_9883993_9883993	0.23907	Aire	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr2_-_165400398_165400410	0.238353	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr17_-_73950172_73950189	0.224871	Aire	ENSMUST00000024866.4|Xdh|ENSMUSG00000024066.8|xanthine dehydrogenase
mm10_v2_chr3_-_62506970_62507027	0.221785	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr13_-_110280103_110280213	0.217784	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr8_-_109962127_109962213	0.216602	Aire	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chrX_+_48256854_48256865	0.21645	Aire	ENSMUST00000080713.4|Utp14a|ENSMUSG00000063785.6|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm10_v2_chr15_-_98165613_98165625	0.2157	Aire	ENSMUST00000143400.1|Asb8|ENSMUSG00000048175.7|ankyrin repeat and SOCS box-containing 8
mm10_v2_chr9_-_53610329_53610382	0.209482	Aire	ENSMUST00000034547.5|Acat1|ENSMUSG00000032047.5|acetyl-Coenzyme A acetyltransferase 1
mm10_v2_chr10_+_86021961_86021991	0.198306	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr16_+_36875119_36875205	0.193147	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr5_+_121660528_121660631	0.191993	Aire	ENSMUST00000031414.8|Brap|ENSMUSG00000029458.8|BRCA1 associated protein
mm10_v2_chr10_+_58446845_58446928	0.189741	Aire	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr5_-_124354671_124354777	0.176519	Aire	ENSMUST00000031341.4|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr9_-_113708209_113708259	0.171634	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr7_-_103741322_103741322	0.163327	Aire	ENSMUST00000051346.2|Olfr629|ENSMUSG00000047545.2|olfactory receptor 629
mm10_v2_chr5_+_130369420_130369476	0.141835	Aire	ENSMUST00000086029.3|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr11_-_67052563_67052618	0.138841	Aire	ENSMUST00000116363.1|Adprm|ENSMUSG00000020910.10|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
mm10_v2_chr5_+_43672289_43672326	0.136284	Aire	ENSMUST00000156034.1|Cc2d2a|ENSMUSG00000039765.9|coiled-coil and C2 domain containing 2A
mm10_v2_chr2_+_25218741_25218750	0.122538	Aire	ENSMUST00000028346.3|Fam166a|ENSMUSG00000026969.3|family with sequence similarity 166, member A
mm10_v2_chr7_-_121981669_121981711	0.119545	Aire	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr6_+_126939957_126939988	0.118191	Aire	ENSMUST00000032497.3|D6Wsu163e|ENSMUSG00000030347.3|DNA segment, Chr 6, Wayne State University 163, expressed
mm10_v2_chr2_-_121473993_121474067	0.116878	Aire	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr4_-_46566432_46566471	0.102493	Aire	ENSMUST00000030021.7|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A 	ENSMUST00000107757.1|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A
mm10_v2_chr7_-_115846080_115846112	0.102458	Aire	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr3_+_88835231_88835231	0.0999986	Aire	ENSMUST00000107498.2|Gon4l|ENSMUSG00000054199.10|gon-4-like (C.elegans)
mm10_v2_chr14_+_124005355_124005355	0.0940126	Aire	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr3_+_54481429_54481429	0.0775674	Aire	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chrM_-_14060_14074	0.0770438	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr2_-_134644125_134644145	0.0627286	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr11_-_101417615_101417615	0.0597958	Aire	ENSMUST00000070395.8|Aarsd1|ENSMUSG00000075528.7|alanyl-tRNA synthetase domain containing 1
mm10_v2_chr3_+_94443315_94443345	0.0512518	Aire	ENSMUST00000029786.7|Mrpl9|ENSMUSG00000028140.7|mitochondrial ribosomal protein L9 	ENSMUST00000098876.3|Mrpl9|ENSMUSG00000028140.7|mitochondrial ribosomal protein L9
mm10_v2_chr5_-_113310697_113310727	0.0509752	Aire	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr10_+_53337686_53337724	0.0503871	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr12_+_10390756_10390836	0.0410912	Aire	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chrX_+_101429555_101429708	0.0381562	Aire	ENSMUST00000033673.6|Nono|ENSMUSG00000031311.11|non-POU-domain-containing, octamer binding protein
mm10_v2_chr10_-_107123585_107123673	0.0314517	Aire	ENSMUST00000165067.1|Acss3|ENSMUSG00000035948.6|acyl-CoA synthetase short-chain family member 3 	ENSMUST00000044668.4|Acss3|ENSMUSG00000035948.6|acyl-CoA synthetase short-chain family member 3
mm10_v2_chr1_-_65186456_65186504	0.0285879	Aire	ENSMUST00000169032.1|Idh1|ENSMUSG00000025950.10|isocitrate dehydrogenase 1 (NADP+), soluble
mm10_v2_chr8_-_54529951_54530007	0.0247988	Aire	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chr8_-_4217261_4217312	0.0203192	Aire	ENSMUST00000168386.2|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr4_+_154869585_154869636	0.0183547	Aire	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr17_-_59013264_59013372	0.0181482	Aire	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr19_-_6118491_6118586	0.0151992	Aire	ENSMUST00000113533.1|Sac3d1|ENSMUSG00000024790.7|SAC3 domain containing 1
mm10_v2_chr2_+_172248492_172248492	0.0055456	Aire	ENSMUST00000038532.1|Mc3r|ENSMUSG00000038537.1|melanocortin 3 receptor
